TreatCFM001907's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glyoxylate cycle | 0.011683984 | plantCyc |
| TCA cycle II (plants and fungi) | 0.011683984 | plantCyc |
| Transcription_related, Transcription factor: NAC | 0.013051924 | TF family |
| gluconeogenesis I | 0.016196614 | plantCyc |
| L-malate dehydrogenase activity | 0.023447049 | GO:0030060 |
| sodium ion transport | 0.040583793 | GO:0006814 |
| malate metabolic process | 0.040583793 | GO:0006108 |
| Carbon metabolism | 0.047108101 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003439 | - | - |
| CRO_T023833 | AT1G33060 (1.00E-60) | ANAC014|NAC 014 |
| CRO_T026823 | - | - |
| CRO_T028274 | AT5G64280 (0) | DiT2.2|dicarboxylate transporter 2.2 |
| CRO_T029427 | AT1G44780 (1.00E-10) | |
| CRO_T032004 | AT3G47520 (4.00E-163) | MDH|malate dehydrogenase; pNAD-MDH|plastidic NAD-dependent malate dehydrogenase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001134 | RNA catabolic process specification of floral organ identity sodium ion transport RNA helicase activity Ubiquitin_Proteasome_system, E3 adaptor: SKP1 Plant-pathogen interaction RNA degradation nucleoplasm ubiquitin-dependent protein catabolic process | details |
| TreatCFM001301 | Cytochrome_P450, Cytochrome P450: CYP85A Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family ribonuclease H2 complex fatty acid elongation -- saturated L-histidine biosynthesis L-leucine degradation I PRPP biosynthesis I L-valine degradation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) lipid homeostasis leucine catabolic process nucleoside metabolic process nucleotide biosynthetic process histidine biosynthetic process sodium ion transport RNA catabolic process branched-chain amino acid catabolic process fatty acid beta-oxidation using acyl-CoA dehydrogenase isovaleryl-CoA dehydrogenase activity histidinol dehydrogenase activity Valine, leucine and isoleucine degradation Brassinosteroid biosynthesis RNA-DNA hybrid ribonuclease activity ribose phosphate diphosphokinase activity | details |
| TreatCFM001806 | rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II L-cysteine biosynthesis I seleno-amino acid biosynthesis 4-hydroxybenzoate biosynthesis I (eukaryotes) checkpoint clamp complex Cell cycle - yeast mitochondrial translational elongation transmembrane transport oxidative photosynthetic carbon pathway DNA damage checkpoint sodium ion transport hydroxypyruvate reductase activity hydroxyphenylpyruvate reductase activity glyoxylate reductase (NADP) activity seed development rRNA processing damaged DNA binding translation elongation factor activity DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |