TreatCFM001925's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Oxidative phosphorylation | 0.004329616 | KEGG pathway |
| mitochondrial respiratory chain complex IV | 0.007710803 | GO:0005751 |
| aerobic respiration I (cytochrome c) | 0.007777821 | plantCyc |
| arginine-tRNA ligase activity | 0.007817416 | GO:0004814 |
| glycine-tRNA ligase activity | 0.007817416 | GO:0004820 |
| glycyl-tRNA aminoacylation | 0.010530279 | GO:0006426 |
| membrane fusion | 0.010530279 | GO:0061025 |
| arginyl-tRNA aminoacylation | 0.010530279 | GO:0006420 |
| Basal transcription factors | 0.019935085 | KEGG pathway |
| proton-transporting ATP synthase activity, rotational mechanism | 0.020275784 | GO:0046933 |
| SNAP receptor activity | 0.020275784 | GO:0005484 |
| cytochrome-c oxidase activity | 0.020275784 | GO:0004129 |
| Aminoacyl-tRNA biosynthesis | 0.020710236 | KEGG pathway |
| ATP synthesis coupled proton transport | 0.045882963 | GO:0015986 |
| single-organism metabolic process | 0.045882963 | GO:0044710 |
| hydrogen ion transmembrane transport | 0.046196814 | GO:1902600 |
| vesicle-mediated transport | 0.046196814 | GO:0016192 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000082 | AT4G37830 (3.00E-16) | cytochrome c oxidase-related |
| CRO_T004588 | AT5G13450 (6.00E-52) | ATP5|delta subunit of Mt ATP synthase |
| CRO_T008076 | AT1G16230 (6.00E-55) | Target SNARE coiled-coil domain protein |
| CRO_T016528 | - | - |
| CRO_T022332 | AT3G48110 (7.00E-41) | EDD1|EMBRYO-DEFECTIVE-DEVELOPMENT 1 |
| CRO_T029985 | AT5G10730 (2.00E-20) | NAD(P)-binding Rossmann-fold superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001200 | Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII arginyl-tRNA aminoacylation glycyl-tRNA aminoacylation arginine-tRNA ligase activity glycine-tRNA ligase activity Aminoacyl-tRNA biosynthesis anion transmembrane transport inorganic phosphate transmembrane transporter activity | details |
| TreatCFM001545 | nucleoside triphosphate biosynthetic process succinate metabolic process succinyl-CoA metabolic process succinate-CoA ligase (ADP-forming) activity cofactor binding succinate-CoA ligase (GDP-forming) activity coniferin metabolism TCA cycle II (plants and fungi) tricarboxylic acid cycle proton-transporting ATP synthase activity, rotational mechanism ATP synthesis coupled proton transport mitochondrial matrix mitochondrial inner membrane | details |
| TreatCFM001773 | negative regulation of cellular process ubiquinone-6 biosynthetic process membrane fusion Phenylpropanoid biosynthesis NADH dehydrogenase activity cinnamoyl-CoA reductase activity Basal transcription factors adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII SNAP receptor activity coenzyme binding | details |
| TreatCFM001905 | Oxidative phosphorylation plasma membrane respiratory chain complex I mitochondrial electron transport, NADH to ubiquinone aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation mitochondrial respiratory chain complex I 2 iron, 2 sulfur cluster binding proton-transporting ATP synthase activity, rotational mechanism zinc ion binding ATP synthesis coupled proton transport NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane Peroxisome response to oxidative stress | details |
| TreatCFM002113 | Oxidative phosphorylation mitochondrial respiratory chain complex IV aerobic respiration I (cytochrome c) proton-transporting ATP synthase activity, rotational mechanism cytochrome-c oxidase activity mitochondrial inner membrane serine-type endopeptidase activity | details |
Expression profiles
 Show details about module gene expression profiling |