TreatCFM001931's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| interphase microtubule organizing center | 0.004795715 | GO:0031021 |
| nuclear outer membrane | 0.004795715 | GO:0005640 |
| gamma-tubulin ring complex | 0.004795715 | GO:0008274 |
| gamma-tubulin small complex, mitotic spindle pole body | 0.004795715 | GO:0061495 |
| mitotic spindle assembly | 0.005192439 | GO:0090307 |
| interphase microtubule nucleation by interphase microtubule organizing center | 0.005192439 | GO:0051415 |
| CENP-A containing nucleosome assembly | 0.005192439 | GO:0034080 |
| gamma-tubulin complex localization | 0.005192439 | GO:0033566 |
| mitotic spindle organization | 0.005192439 | GO:0007052 |
| gamma-tubulin binding | 0.005849767 | GO:0043015 |
| equatorial microtubule organizing center | 0.005993314 | GO:0000923 |
| preprophase band | 0.005993314 | GO:0009574 |
| kinetochore | 0.005993314 | GO:0000776 |
| kinetochore microtubule | 0.005993314 | GO:0005828 |
| DNA replication | 0.007425381 | KEGG pathway |
| histone binding | 0.010225752 | GO:0042393 |
| phragmoplast | 0.017244174 | GO:0009524 |
| cell periphery | 0.017244174 | GO:0071944 |
| vesicle docking | 0.018152063 | GO:0048278 |
| exocyst | 0.020892764 | GO:0000145 |
| single-organism process | 0.025249629 | GO:0044699 |
| exocytosis | 0.025249629 | GO:0006887 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000042 | AT1G03510 (7.00E-15) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T008732 | AT4G09550 (5.00E-24) | ATGIP1|ARABIDOPSIS ATGCP3 INTERACTING PROTEIN 1; GIP1|AtGCP3 interacting protein 1; GIP1a|GCP3-Interacting Protein 1a |
| CRO_T009246 | AT3G10380 (1.00E-23) | ATSEC8|SUBUNIT OF EXOCYST COMPLEX 8 |
| CRO_T015003 | AT5G12370 (5.00E-109) | SEC10|exocyst complex component sec10 |
| CRO_T019816 | AT3G62190 (1.00E-13) | Chaperone DnaJ-domain superfamily protein |
| CRO_T026740 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000724 | Notch signaling pathway endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Golgi-associated vesicle single-organism developmental process anatomical structure development vesicle docking aspartic-type endopeptidase activity exocytosis exocyst cytosolic small ribosomal subunit | details |
| TreatCFM001938 | Cell cycle DNA replication mRNA surveillance pathway | details |
| TreatCFM002027 | γ-glutamyl cycle glucan 1,3-alpha-glucosidase activity alkane biosynthetic process cuticle hydrocarbon biosynthetic process N-Glycan biosynthesis cell periphery carbohydrate binding cytoplasmic part single-organism process | details |
| TreatCFM002050 | homogalacturonan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc phosphatidylinositol phosphorylation cytoplasmic translation 3-phosphoinositide biosynthesis homogalacturonan biosynthesis phosphatidylinositol phosphate kinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity Cell cycle DNA replication Inositol phosphate metabolism Golgi membrane endosome cytosolic large ribosomal subunit trans-Golgi network Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM002162 | CTD phosphatase activity dephosphorylation of RNA polymerase II C-terminal domain DNA-directed RNA polymerase II, holoenzyme Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Proteasome threonine-type endopeptidase activity cytosolic ribosome proteasome core complex Transcription_related, Transcription regulator: PHD vesicle docking exocyst exocytosis proteolysis involved in cellular protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |