TreatCFM001968's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| octanoyltransferase activity | 0.003217847 | GO:0016415 |
| 4-amino-4-deoxychorismate synthase activity | 0.003217847 | GO:0046820 |
| lipoyl(octanoyl) transferase activity | 0.003217847 | GO:0033819 |
| oxo-acid-lyase activity | 0.003217847 | GO:0016833 |
| 4-aminobenzoate biosynthesis | 0.004048164 | plantCyc |
| lipoate biosynthesis and incorporation I | 0.004048164 | plantCyc |
| lipoate biosynthetic process | 0.004559822 | GO:0009107 |
| protein lipoylation | 0.004559822 | GO:0009249 |
| tetrahydrofolate biosynthetic process | 0.004559822 | GO:0046654 |
| carboxylic acid metabolic process | 0.004559822 | GO:0019752 |
| Lipoic acid metabolism | 0.007386615 | KEGG pathway |
| Fatty acid elongation | 0.009346705 | KEGG pathway |
| Folate biosynthesis | 0.009346705 | KEGG pathway |
| nuclear lumen | 0.010339733 | GO:0031981 |
| tetrahydrofolate biosynthesis II | 0.01482354 | plantCyc |
| very long chain fatty acid biosynthesis I | 0.025717586 | plantCyc |
| very long chain fatty acid biosynthesis II | 0.026595779 | plantCyc |
| transferase activity, transferring acyl groups other than amino-acyl groups | 0.027789283 | GO:0016747 |
| DNA-directed RNA polymerase activity | 0.027789283 | GO:0003899 |
| fatty acid biosynthetic process | 0.034760781 | GO:0006633 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002049 | AT1G54740 (8.00E-18) | Protein of unknown function (DUF3049) |
| CRO_T012009 | AT1G01120 (0) | KCS1|3-ketoacyl-CoA synthase 1 |
| CRO_T013847 | AT1G30845 (1.00E-16) | unknown protein |
| CRO_T016100 | AT1G01210 (1.00E-24) | DNA-directed RNA polymerase, subunit M, archaeal |
| CRO_T017156 | AT2G28880 (0) | ADCS|aminodeoxychorismate synthase; emb1997|embryo defective 1997 |
| CRO_T033362 | AT1G04640 (2.00E-99) | LIP2|lipoyltransferase 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000553 | oxo-acid-lyase activity 4-amino-4-deoxychorismate synthase activity octanoyltransferase activity Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity 4-coumarate-CoA ligase activity Folate biosynthesis Phenylalanine metabolism cellular protein modification process carboxylic acid metabolic process tetrahydrofolate biosynthetic process lipoate biosynthetic process 4-aminobenzoate biosynthesis 4-hydroxybenzoate biosynthesis I (eukaryotes) tetrahydrofolate biosynthesis II umbelliferone biosynthesis Flavonoid biosynthesis suberin monomers biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM000671 | integral component of membrane plasma membrane Cytochrome_P450, Cytochrome P450: CYP94B Cutin, suberine and wax biosynthesis Fatty acid elongation transmembrane transport organophosphate ester transport organic phosphonate transport Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) phosphate acquisition very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II MAPK signaling pathway - plant aromatase activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor organic phosphonate transmembrane-transporting ATPase activity | details |
| TreatCFM001671 | 2-oxoglutarate decarboxylation to succinyl-CoA Transcription_related, Transcription factor: LOB carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity oxoglutarate dehydrogenase (succinyl-transferring) activity thiamine pyrophosphate binding membrane coat lyase activity S-adenosylmethionine-dependent methyltransferase activity Lysosome Peroxisome | details |
| TreatCFM002026 | carpel development regulation of meristem structural organization magnesium ion transport magnesium ion transmembrane transport Transcription_related, Transcription factor: HB magnesium ion transmembrane transporter activity lyase activity | details |
| TreatCFM002067 | 4-amino-4-deoxychorismate synthase activity oxo-acid-lyase activity 4-coumarate-CoA ligase activity Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc tetrahydrofolate biosynthetic process carboxylic acid metabolic process Folate biosynthesis Phenylalanine metabolism glycosyl compound metabolic process 4-aminobenzoate biosynthesis coumarin biosynthesis (via 2-coumarate) 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis beta-glucosidase activity plastid tetrahydrofolate biosynthesis II Flavonoid biosynthesis peptidase activity suberin monomers biosynthesis Phenylpropanoid biosynthesis Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |