TreatCFM002016's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| trans-Golgi network membrane | 0.002955301 | GO:0032588 |
| Legionellosis | 0.003190782 | KEGG pathway |
| myosin XI tail binding | 0.003909574 | GO:0080115 |
| GTP-dependent protein binding | 0.003909574 | GO:0030742 |
| glycerophosphodiester phosphodiesterase activity | 0.006079763 | GO:0008889 |
| protein tyrosine phosphatase activity | 0.013015555 | GO:0004725 |
| nuclear pore | 0.016966634 | GO:0005643 |
| peptidyl-tyrosine dephosphorylation | 0.038414959 | GO:0035335 |
| lipid metabolic process | 0.038754009 | GO:0006629 |
| small GTPase mediated signal transduction | 0.038754009 | GO:0007264 |
| ER to Golgi vesicle-mediated transport | 0.038754009 | GO:0006888 |
| RNA transport | 0.040243127 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007495 | AT2G14110 (6.00E-26) | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| CRO_T010314 | AT3G14120 (0) | unknown protein |
| CRO_T010891 | AT4G39420 (5.00E-14) | unknown protein |
| CRO_T013062 | AT4G39420 (0) | unknown protein |
| CRO_T021066 | AT1G66970 (1.00E-30) | GDPDL1|Glycerophosphodiester phosphodiesterase (GDPD) like 1; SVL2|SHV3-like 2 |
| CRO_T032610 | AT3G11730 (3.00E-92) | ATRABD1|RAB GTPASE HOMOLOG D1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000840 | RNA-directed RNA polymerase activity transcription, RNA-templated nucleotide binding reactive oxygen species degradation superoxide radicals degradation positive regulation of posttranscriptional gene silencing response to virus wax biosynthetic process catalase activity glycerophosphodiester phosphodiesterase activity red or far-red light signaling pathway production of siRNA involved in RNA interference response to hydrogen peroxide Circadian rhythm Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase negative regulation of transcription, DNA-templated cell surface receptor signaling pathway Circadian rhythm - plant | details |
| TreatCFM001829 | RNA-directed RNA polymerase activity transcription, RNA-templated response to virus wax biosynthetic process positive regulation of posttranscriptional gene silencing positive regulation of transcription elongation from RNA polymerase II promoter elongin complex production of siRNA involved in RNA interference glycerophosphodiester phosphodiesterase activity nucleotide binding Transcription_related, Transcription regulator: IWS1 Ubiquitin mediated proteolysis translation elongation factor activity translational elongation Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 protein ubiquitination involved in ubiquitin-dependent protein catabolic process lipid metabolic process ubiquitin-protein transferase activity | details |
| TreatCFM001983 | adenosine ribonucleotides de novo biosynthesis protein export from nucleus mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) nuclear export signal receptor activity protein import into nucleus peptidyl-tyrosine dephosphorylation nuclear envelope proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism protein tyrosine phosphatase activity Ran GTPase binding ATP synthesis coupled proton transport formation of glycosidic bonds, GlycosylTransferases: GTnc Oxidative phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |