TreatCFM002021's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RIG-I-like receptor signaling pathway | 0.007960653 | KEGG pathway |
| MAPK signaling pathway - yeast | 0.008523224 | KEGG pathway |
| rRNA (guanine-N7)-methylation | 0.008552031 | GO:0070476 |
| peptidyl-glutamine methylation | 0.008552031 | GO:0018364 |
| Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | 0.011369337 | kinase family |
| membrane coat | 0.012505162 | GO:0030117 |
| Lysosome | 0.013611794 | KEGG pathway |
| vacuole organization | 0.01923013 | GO:0007033 |
| cytoskeleton organization | 0.01923013 | GO:0007010 |
| Ubiquitin_Proteasome_system, DUB: OTU | 0.019286794 | ubs family |
| Wnt signaling pathway | 0.020506684 | KEGG pathway |
| tRNA methylation | 0.021959762 | GO:0030488 |
| regulation of cell shape | 0.021959762 | GO:0008360 |
| protein deubiquitination | 0.022760977 | GO:0016579 |
| Endocytosis | 0.022760977 | KEGG pathway |
| thiol-dependent ubiquitin-specific protease activity | 0.023599988 | GO:0004843 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.027885732 | cazy family |
| actin binding | 0.041534694 | GO:0003779 |
| transferase activity, transferring acyl groups | 0.041534694 | GO:0016746 |
| peptidyl-serine phosphorylation | 0.045121309 | GO:0018105 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000666 | AT2G27350 (1.00E-127) | OTLD1|otubain-like deubiquitinase 1 |
| CRO_T026053 | AT5G43320 (7.00E-124) | ckl8|casein kinase I-like 8 |
| CRO_T026090 | AT2G41740 (2.00E-09) | VLN2|villin 2 |
| CRO_T026854 | AT1G20230 (8.00E-78) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T028056 | AT1G78190 (1.00E-25) | Trm112p-like protein |
| CRO_T031414 | AT5G11730 (4.00E-112) | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| CRO_T031910 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001411 | xylogalacturonan biosynthesis rRNA (guanine-N7)-methylation peptidyl-glutamine methylation formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Ubiquitin_Proteasome_system, DUB: OTU RIG-I-like receptor signaling pathway ER to Golgi transport vesicle membrane pre-autophagosomal structure late endosome membrane Golgi apparatus Golgi to vacuole transport autophagosome assembly cytoskeleton organization vesicle fusion with Golgi apparatus Autophagy - animal protein deubiquitination retrograde transport, endosome to Golgi intra-Golgi vesicle-mediated transport protein targeting to vacuole tRNA methylation | details |
| TreatCFM001635 | phosphoribosyl-AMP cyclohydrolase activity phosphoribosyl-ATP diphosphatase activity L-histidine biosynthesis histidine biosynthetic process DNA binding Basal transcription factors Biosynthesis of amino acids transferase activity, transferring acyl groups chloroplast stroma | details |
| TreatCFM001889 | regulation of signal transduction ubiquitin-protein transferase activity heterocyclic compound binding organic cyclic compound binding transferase activity, transferring acyl groups zinc ion binding | details |
Expression profiles
 Show details about module gene expression profiling |