TreatCFM002108's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription regulator: SNF2 | 0.009478603 | TF family |
| isoprenoid biosynthetic process | 0.01177337 | GO:0008299 |
| RNA degradation | 0.015210399 | KEGG pathway |
| RNA processing | 0.016986115 | GO:0006396 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004795 | AT1G33680 (2.00E-39) | KH domain-containing protein |
| CRO_T014927 | AT2G28290 (6.00E-57) | CHR3|CHROMATIN REMODELING COMPLEX SUBUNIT R 3; SYD|SPLAYED |
| CRO_T016492 | AT5G05250 (3.00E-33) | unknown protein |
| CRO_T024459 | - | - |
| CRO_T024864 | AT1G24300 (8.00E-18) | GYF domain-containing protein |
| CRO_T032204 | - | - |
| CRO_T032944 | AT1G06670 (1.00E-38) | NIH|nuclear DEIH-boxhelicase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000757 | Transcription_related, Transcription regulator: SNF2 Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis pinobanksin biosynthesis response to fungus response to bacterium integral component of plasma membrane isoprenoid biosynthetic process glucose import single-organism cellular process glucose transmembrane transport proton transport cation binding glucose transmembrane transporter activity sugar:proton symporter activity protein serine/threonine phosphatase activity protein dephosphorylation | details |
| TreatCFM001100 | pyrimidine ribonucleosides salvage I amyloplast organization protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway negative gravitropism 1,3-β-D-glucan biosynthesis detoxification of reactive carbonyls in chloroplasts ESCRT II complex formation of translation preinitiation complex regulation of translational initiation eukaryotic 43S preinitiation complex eukaryotic 48S preinitiation complex membrane part eukaryotic translation initiation factor 3 complex plant-type vacuole membrane | details |
| TreatCFM002101 | CMP-3-deoxy-D-manno-octulosonate biosynthesis RNA degradation Lipopolysaccharide biosynthesis fruit development organ morphogenesis reactive oxygen species metabolic process endoplasmic reticulum unfolded protein response lateral root development regulation of root development response to extracellular stimulus defense response to fungus, incompatible interaction 3-deoxy-8-phosphooctulonate synthase activity Autophagy - animal Ras signaling pathway Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 ATG1/ULK1 kinase complex heterotrimeric G-protein complex negative regulation of abscisic acid-activated signaling pathway autophagy histone acetylation ATP binding large ribosomal subunit rRNA binding Cul4-RING E3 ubiquitin ligase complex histone acetyltransferase activity Transcription_related, Transcription regulator: mTERF jasmonic acid mediated signaling pathway response to ethylene poly(A) RNA binding biosynthetic process RNA processing | details |
Expression profiles
 Show details about module gene expression profiling |