Gene detail

Detail information of MD05G1002700 Annotation

Gene ID	Annotation
MD05G1002700	cellulase 3

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1002700	mRNA	Chr05	1042179	1046269	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH9

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G22880.1	1	ATCEL5;ATGH9B4;CEL5\|ARABIDOPSIS THALIANA CELLULASE 5;ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4;cellulase 5
Pyrus communis	PCP028104.1	1	-
Pyrus x bretschneideri	Pbr008024.1	1	-
Rubus occidentalis	Ro02_G08768	1	-
Vitis vinifera	GSVIVT01037210001	1	cellulase 3
Solanum lycopersicum	Solyc11g040340.1.1	1	cellulase 3
Populus trichocarpa	Potri.019G069300.1	1	cellulase 3
Nicotiana benthamiana	Niben101Scf01184g16001.1	1	Endoglucanase 9
Oryza sativa	LOC_Os04g36610.1	1	"endoglucanase, putative"
Zea mays	GRMZM2G125436_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005975	carbohydrate metabolic process	biological_process
GO:0003824	catalytic activity	molecular_function

KEGG

KO	Description	Enzyme
K01179	endoglucanase	EC:3.2.1.4

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.15	Glyco_hydro_9	35	486	1.20E-135

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.366059
SRR5252888	dormant buds	no	dormant buds(0 month)	0.260575
SRR5252889	dormant buds	no	dormant buds(0 month)	0.402483
SRR5252886	dormant buds	no	dormant buds(1 months)	0
SRR5252887	dormant buds	no	dormant buds(1 months)	0.820862
SRR5252884	dormant buds	no	dormant buds(2 months)	0.468184
SRR5252882	dormant buds	no	dormant buds(3 months)	0.563476
SRR5252883	dormant buds	no	dormant buds(3 months)	0.818671
SRR5252880	dormant buds	no	dormant buds(4 months)	0.187451
SRR5252881	dormant buds	no	dormant buds(4 months)	0.156047
SRR5252878	bud break	no	bud break	0.746828
SRR5252879	bud break	no	bud break	0.414075
SRR3744766	flower	no	mature	0.0391643
SRR3744767	flower	no	mature	0
SRR3744768	flower	no	mature	0
SRR6308190	stigmas	no	open flowers	0.224342
SRR6308181	styles	no	open flowers	0
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0.0800146
SRR6308193	receptacles	no	open flowers	0
SRR6308189	ovaries	no	open flowers	0.0518699
SRR3384922	fruit	no	1 week after full bloom	0.0879167
SRR3384921	fruit	no	2 week after full bloom	0.142747
SRR3384920	fruit	no	3 week after full bloom	0.251382
SRR3384919	fruit	no	4 week after full bloom	0.0387066
SRR3384923	fruit	no	5 week after full bloom	0.184048
SRR3384918	fruit	no	6 week after full bloom	0.204884
SRR3384917	fruit	no	8 week after full bloom	0.0591598
SRR3384916	fruit	no	10 week after full bloom	0
SRR3384915	fruit	no	12 week after full bloom	0.272797
SRR3384914	fruit	no	14 week after full bloom	0.132287
SRR3384913	fruit	no	16 week after full bloom	0.0519373
SRR3384912	fruit	no	18 week after full bloom	0.194962
SRR3384911	fruit	no	19 week after full bloom	0.233739
SRR3384910	fruit	no	20 week after full bloom	0.109807
SRR768128	whole fruit	no	25 days post anthesis	0.0529472
SRR768129	whole fruit	no	35 days post anthesis	0
SRR768130	whole fruit	no	60 days post anthesis	0
SRR768131	whole fruit	no	87 days post anthesis	0
SRR7343308	immature fruit flesh	no	immature	0
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.0244202
SRR7403506	fruit	uninfected	mature	0.0257963
SRR7403507	fruit	uninfected	mature	0.0306288
SRR7403500	fruit	infected with penicillium expansum	mature	0.0631151
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0.0524102
SRR1613973	Central seeds	no	20DAPF	0.0262691
SRR1613974	Central seeds	no	20DAPF	0.126333
SRR1613975	Central seeds	no	20DAPF	0.0245023
SRR1613976	Lateral seeds	no	20DAPF	0.0386599
SRR1613977	Lateral seeds	no	20DAPF	0.0373832
SRR1613978	Lateral seeds	no	20DAPF	0.0114461
SRR3744786	stem	no	mature	0.0402931
SRR3744787	stem	no	mature	0
SRR3744772	stem	no	mature	0.0198759
SRX765691	seedling shoot apex	no	4-6 week old seedling	0
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.025516
SRR1089478	leaf	Virus-free	plantlets	0
SRR1089477	leaf	ASGV-infected	plantlets	0
SRR767660	leaf	uninfected	fully developed	0
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.260018
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.218861
SRR6308182	young leaf	no	immature leaves	0.0535999
SRR3744769	leaf	no	mature	0
SRR3744770	leaf	no	mature	0.0433142
SRR3744771	leaf	no	mature	0.0213179
SRR5405145	leaf	no	mature	0
SRR6320561	leaf	no	mature	0