Gene detail

Detail information of MD05G1324100 Annotation

Gene ID	Annotation
MD05G1324100	ARF-GAP domain 5

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0234	serine-type endopeptidase inhibitor activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD05G1324100	mRNA	Chr05	45096271	45100619	+

Sequences

CDS:

MD05G1324100

TTTTCTACAGCATAACACATCAGGCCGAAATAAAACGTATTTCCTCTACTTTACAAAAAATTGGTGGTATTTACAAGGTAGAGGTTGCACAGGGAGCGGCAGATTGTTTTGTTTTCTTGATCGACGGGAGCGGCAGATAAGAGGGTTGGGACTGAATAAAAGGGACTAAAAATATGTATGATTGTCTGGTCGTTAAACCAAACAGTGGAGTGGAGAAGAAAATTCCAAACGAATGAAAAAACTGAGGACGGCGCCGTCAAAGGCCAACAACACGCGTGACGCGAAGAGAAAAGGCCAAAAATTCCATGCCACCTTCCAAACTCCAACACACAACGACGACATCATCAGCAAGGCAAAGCAAAGATTCCCACTTTTCCCATTTCCAGAAGCACAAACAAAGACGCAACCTTTTTTAGAGAGAGAAACAGAGGAGAGAGAGAGTTTAAGAGAAAGAGAGAGAGAGGGGGTGTTTGGATAATTGGGTGGCAGCAGCAACATGAACCAGAAGGCTAGCGTTTCTAAAGAGCTTAATGCAAAACACAGAAAGAGATTGGAGGGTCTTCTTAAACTACAAGAGAACAGAGAATGCGCAGACTGCAAAACCAAAGCTCCACGATGGGCTAGCGTGAATCTTGGTATCTTCATATGCATGCAATGTTCAGGGATCCACAGGAGTCTTGGGGTACATATATCACAGGTGAGATCTGCCACTTTGGATACATGGCTCCCAGAGCAGGTTGCGTTTATCCAATCTATGGGAAACGATAAAGCGAATAGCTATTGGGAAGCCGAGTTGCCTCCTAAGTATGACAGAGTTGGAATCGAGAATTTCATTCGAGCAAAGTATGAACACAAAAAATGGGTTCCTGGGGATGGAAAAGCGAAATCACCTGCGAGGGTGAGTGAGGCAATGACTTCCGTTTATAGAGCGAGACCTGAAACTAGTACTCAACATGTCCATTTGAAAAAGATGGAACAGTTTTCTGAGGAGCAGAAAGGTGCTCGTACACACGGTACAAATAACTTGACAACGCAGCAGATCAGTCATGATCCAAAACCACAAGCACTTGTGCAGAAACCAAAACAACAAGAACTTGTGCAGAAACCAAAACAACAAGAACTTGTGCAGAAACCAAAACAACAAGAACTTGTTCAGAAACCTAAACCACAAGAACTTGCACAGGAACCAAAACCAGTAGTCTTGAAAGTTGAACCAGCAAGTGAGGCGGGTAGTGTTAGGCCCGTTTCAGTACCAGTTAAAGTGGATTATGCTACTCATTTGTTCAATTTGCTATCCATGGAGGAAGCTGTAGAAAATGACTCAGTGATATCTGCCAACACGAATACATTGGCTGGTAACCACGTTGAAACAAAGTTGACAGAAGAGAAAAGTAAAAGGCCAGAATCATCCGAAAGCAAGATTCAACCAAAATATGGTGGTCTCGAGGATTTATTTGTACATCCAACCCCCGACACTCAACCGTTCTCAATGAAACCTCAGAATTATGTGCAGAATGACATTATGAACTTATTCGAGAAGTCCAGTGTGGCTTCTCCATCCTCTGTGCATCAACAGCAACTTGCAATGCCATACCAACAACAGGCATTACCCATGGCGACTGTGGCGAAATCTAGTGGATCCCATTCCGTTCCTGCAAACGTACAACCTGGCTCCCATTCTATCCAGCACTTACCCGCCCGAAATGGGCAAAGCATTGGTCGCCAAGTTCCTGGATACCTGGTACCTGTTCATCCTCAACATTATCCTCAGATTGGAAACAGCTATCATACACGTCCGGTAGAGAATACAGTTCCTTTCCAAACATCAAGCATGTACAGGACGAGGCCAGTAACACCAATTAATGGTGTCACAAACATCAGAGCTAATGGATTTTCATCAGCGTCACCAATATCTTCTTTCCCTTCAACTAAGTCAGGAAGCGATTTCGATTTCTCATCATTAACTCAAGGATTGTTTACCAAACGGTGAGCAGTTGCTCCTGCTGCGAGTAAAACGAGCCGCTCCAATCAATCATCGGTGATTCTACAGAATGAAAGAAATTGATGGAGAATTATTGGAGCAATAGTATTTTAGATGATTCCTTCCTAAGATGTTGATTTCAATTGTATCAGTAGGCCTGTCTCAGTAAATTTGGGTTCATATTGCTTGGAATGAATTCACCTTCTTTTAGTTGCTTGTAATTAGGCCTTTTCATCTCTGTTAAATGACGAAAACTAGGATTAAACGTGTTCATCCCAGCACGCGAGGTCATGTTCATTCCCTTCCCCTTTATACAGATCACGATTGACTAAATACGATCCATATTCATTTTTGTTGGTCTTCATTCTTCACGCGCATGAAGCAGCACCTTAT

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.4G038100.6.p	1	ARF-GAP domain 5
Prunus persica	Prupe.4G038100.1.p	0.982	ARF-GAP domain 5
Prunus persica	Prupe.4G038100.7.p	0.982	ARF-GAP domain 5
Prunus persica	Prupe.4G038100.2.p	0.623	ARF-GAP domain 5
Prunus persica	Prupe.4G038100.3.p	0.604	ARF-GAP domain 5
Pyrus communis	PCP035861.1	1	-
Pyrus x bretschneideri	Pbr000291.1	1	-
Rubus occidentalis	Ro03_G05935	1	-
Fragaria vesca	mrna30679.1	1	ARF-GAP domain 5

Gene Ontology

GO term	Description	Category
GO:0032312	regulation of ARF GTPase activity	biological_process
GO:0008060	ARF GTPase activator activity	molecular_function
GO:0008270	zinc ion binding	molecular_function

KEGG

KO	Description	Enzyme
K12486	stromal membrane-associated protein	-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.14	ArfGap	18	123	3.50E-40

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	5.13022
SRR5252888	dormant buds	no	dormant buds(0 month)	4.09911
SRR5252889	dormant buds	no	dormant buds(0 month)	3.08659
SRR5252886	dormant buds	no	dormant buds(1 months)	5.12032
SRR5252887	dormant buds	no	dormant buds(1 months)	8.34732
SRR5252884	dormant buds	no	dormant buds(2 months)	13.257
SRR5252882	dormant buds	no	dormant buds(3 months)	8.42084
SRR5252883	dormant buds	no	dormant buds(3 months)	12.959
SRR5252880	dormant buds	no	dormant buds(4 months)	4.86551
SRR5252881	dormant buds	no	dormant buds(4 months)	4.74591
SRR5252878	bud break	no	bud break	4.03849
SRR5252879	bud break	no	bud break	2.48339
SRR3744766	flower	no	mature	14.0719
SRR3744767	flower	no	mature	14.0793
SRR3744768	flower	no	mature	14.0737
SRR6308190	stigmas	no	open flowers	6.37258
SRR6308181	styles	no	open flowers	4.4192
SRR6308188	filaments	no	open flowers	2.28466
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	6.21671
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	7.36354
SRR6308194	sepals	no	open flowers	10.293
SRR6308193	receptacles	no	open flowers	2.26643
SRR6308189	ovaries	no	open flowers	2.33394
SRR3384922	fruit	no	1 week after full bloom	2.17817
SRR3384921	fruit	no	2 week after full bloom	1.23501
SRR3384920	fruit	no	3 week after full bloom	0.593151
SRR3384919	fruit	no	4 week after full bloom	1.24819
SRR3384923	fruit	no	5 week after full bloom	1.47653
SRR3384918	fruit	no	6 week after full bloom	1.61145
SRR3384917	fruit	no	8 week after full bloom	2.83836
SRR3384916	fruit	no	10 week after full bloom	2.87123
SRR3384915	fruit	no	12 week after full bloom	3.57601
SRR3384914	fruit	no	14 week after full bloom	3.74567
SRR3384913	fruit	no	16 week after full bloom	6.25002
SRR3384912	fruit	no	18 week after full bloom	3.79521
SRR3384911	fruit	no	19 week after full bloom	5.69907
SRR3384910	fruit	no	20 week after full bloom	6.44861
SRR768128	whole fruit	no	25 days post anthesis	0.916882
SRR768129	whole fruit	no	35 days post anthesis	1.14417
SRR768130	whole fruit	no	60 days post anthesis	1.38119
SRR768131	whole fruit	no	87 days post anthesis	5.83348
SRR7343308	immature fruit flesh	no	immature	2.65379
SRR7343309	immature fruit flesh	no	immature	2.03618
SRR6320494	ripe fruit flesh	no	mature	4.50796
SRR5405143	ripe fruit peel	no	mature	3.52539
SRR6320572	ripe fruit peel	no	mature	3.92572
SRR7403504	fruit	uninfected	mature	10.243
SRR7403506	fruit	uninfected	mature	10.4548
SRR7403507	fruit	uninfected	mature	10.4369
SRR7403500	fruit	infected with penicillium expansum	mature	66.5565
SRR7403501	fruit	infected with penicillium expansum	mature	70.4646
SRR7403508	fruit	infected with penicillium expansum	mature	70.4574
SRR7403502	fruit	infected with penicillium expansum	mature	49.1744
SRR7403503	fruit	infected with penicillium expansum	mature	51.0695
SRR7403505	fruit	infected with penicillium expansum	mature	53.3294
SRR1613973	Central seeds	no	20DAPF	2.66881
SRR1613974	Central seeds	no	20DAPF	3.45387
SRR1613975	Central seeds	no	20DAPF	2.59545
SRR1613976	Lateral seeds	no	20DAPF	4.73449
SRR1613977	Lateral seeds	no	20DAPF	4.19835
SRR1613978	Lateral seeds	no	20DAPF	4.62443
SRR3744786	stem	no	mature	16.4977
SRR3744787	stem	no	mature	15.9875
SRR3744772	stem	no	mature	15.7278
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.85404
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.791406
SRR1089478	leaf	Virus-free	plantlets	3.53139
SRR1089477	leaf	ASGV-infected	plantlets	2.79095
SRR767660	leaf	uninfected	fully developed	0.811331
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.833841
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0.8733
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	5.37592
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	3.38451
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.48218
SRR6308182	young leaf	no	immature leaves	3.17309
SRR3744769	leaf	no	mature	11.7122
SRR3744770	leaf	no	mature	12.1421
SRR3744771	leaf	no	mature	11.929
SRR5405145	leaf	no	mature	6.3958
SRR6320561	leaf	no	mature	3.5