Gene detail

Detail information of MD08G1250900 Annotation

Gene ID	Annotation
MD08G1250900	glycosyl hydrolase 9A1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD08G1250900	mRNA	Chr08	31583528	31586917	+

Sequences

CDS:

MD08G1250900

GAAAAATAAAACCTCTCCCACCGTCACCCATCCAAGTTCAACCTACCCAAGAGAGAGACCCAACCCTTCCCAATTATTGAATAAATTAATAGATAATACACCATAAAAAGTCCAAATTCAGTCCCCATTTCCTTTTTATTACCAGCAACTAGCTTGTTTGTTTTTGTGAATTCAGTTCATTCATTACCCATCAGATCTGATCTGGTAGTGCTTTACTTTTGGTGTCGGTGTCCGTGGGAAACTCAATAACATCTGTCGGTCGGCAGGCATTCTATCAGAGCTATGAGCATGTACGGCAGGGACCCCTGGGGGGGGCCGCTGGAGATAAACACGGCTGACTCTGCCACCGACGACGACCGCAGCCGGAACCTGCAGGATCTGGACAGGGCGGCGCTGTCGTCGCGGCCGCTGGACGAGACTCAGCAGAGCTGGCTGCTGGGGCCCTCCGGCGAGCAGAAGAAGAAGAAGTATGTGGATCTGGGATGCATCATCGTCAGCCGTAAGATCTTTGTGTGGACGGTCGGGACGCTGCTGGTCTCCGCCTTCTTGGCGGGCTTCATCACGCTCATCGTCAAGACTGTGCCGCGTCACCGCCACGCCCGCCCTCCCCCCGACAACTACACTTTGGCGCTTCGCAAGTCCCTAATGTTCTTCAACGCTCAACGATCCGGAAAACTCCCAAAGCATAACAATGTGTCGTGGAGGGGTAATTCGTGCTTAAAGGATGGCAATGATCCCTCCACCACTTTCAAAGATCTTGCCGGTGGCTTTTATGACGCCGGAGATGCTATCAAGTTCAATTTTCCCGCCTCCTTCGCCATGACCATGCTCAGCTGGAGCGTCATCGAATACAGTGCTAAGTATGAAGCTTCCGGGGAGCTTTCCCATGTTAAAGAAATCATTAAATGGGGATCCGATTATTTTTTGAAGACCTTCAACCATTCTGCCGATTCCATTGACAAACTTGTTGCCCAGGTTGGGGTAGGATCTACTGCCGGAGGAAGTACTACTCCTAATGATCATTATTGCTGGATGCGTCCTGAGGATATTGATTACCAGCGTCCTGTGTCTGAGTGTCACAGTTGCTCTGATCTAGCTGCGGAAATGGCCGCGGCGCTAGCTGCTTCGTCCATAGTTTTCAAAGATAACAAGGCATACTCTCAGAAACTTGTCCATGGTGCAAAAACACTCTTCAGATTTTCAAGGGAGCAGAGAGGCAGATATACTGCCGGTGGTAGTACAGATGCGGCAACCTTCTACAATTCCACCAGCTATTGGGATGAGTTCATATGGGGTGGAGCTTGGATGTATTATGCTACTGGAAATTCCTCTTATCTTCAGCTTGCAACAACTCCAGGTCTTGCTAAACATGCCGGTGCTTTCTGGGGAGGACCTGATTATGGAGTATTGAGCTGGGACAACAAGCTTGCTGGAGCTCAGGTGCTTCTGAGCCGTTTGAGGTTATTCTTGAGCCCTGGGTATCCGTATGAAGAAATTTTGAGGACATTTCACAACCAGACTAGCATAATCATGTGCTCATACTTGCCTGTTTTTACAACCTTTAACAGAACCAAAGGAGGCTTGATTCAGTTGAATCATGGAAGGCCACAACCTCTTCAATATGTAGTCAATGCAGCCTTCTTAGCTACTTTGTATAGTGATTATCTTGATGCTGCTGATACACCTGGGTGGTATTGTGGACCCAACTTCTACTCTACTGACGTTTTGCGAGAATTTGCCAAAACTCAGATTGATTACATCCTTGGCAAAAATCCTCGAAAAATGAGTTATGTCGTGGGCTTTGGGAATCATTACCCAAAACATGTCCACCACAGAGGCGCATCTATTCCAAAGAACAAAATCAAATACAGTTGTAAGGGGGGATGGAAATGGAGAGACACTTCAAAGGCAAATCCAAACACGATTGATGGGGCCATGGTTGCTGGCCCTGACAAACATGATGGTTTCCGTGATGTTCGTTCTAATTACAACTACACAGAGCCGACTCTCGCAGGAAATGCAGGTTTGGTAGCAGCACTCGTTGCTTTGTCTGGAGAAAAATCTGTTGGAATTGACAAAAATACGATTTTCTCTGCGGTTCCTCCAATGTTCCCCACTCCACCACCACCTCCGGCACCCTGGAAACCATGAGATGCTAAAGCGGTCACTGTTGTTTTAATGTGTGTGACTTATGGGTAGATGATTTCGCTGCAGTGAGACTTTGAAGCTTATATCTCGTTGACATAAACAGTAACTCAGTAACACGAAGATCGAGAGGATGGGCGCAAGGAAGTAATGGACAGACTTTGAGAGATTGTTGGGCTGGGCTGGGGCCGAAGAGCGTCGCAAAGAATTGATAAAAATGTCTTTGATTGAATTTTGTGATATATACAGTATATATGTATGGAACAAATCCTGTATTCTTTAAAACATGGAAAATGAACAGTTTGAATTTGGTTGACAGATTTTAAATTTGAATTTTGCATGTCAGTCGTATATTTTTTTTCTCGCTCCTCCACCTCCCCGGAATTTGTATTTTGACAAGAATGTGTCATGCTATTGCTGTTATGAACATTGAGTTGTATACTCCGATTCGACCCGACTCAGCTTCTTACTTTA

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH9

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT5G49720.1	1	ATGH9A1;DEC;GH9A1;IRX2;KOR;KOR1;RSW2;TSD1\|glycosyl hydrolase 9A1;DEFECTIVE CYTOKINESIS;IRREGULAR XYLEM 2;KORRIGAN;KORRIGAN 1;RADIALLY SWOLLEN 2;TUMOROUS SHOOT DEVELOPMENT 1
Prunus persica	Prupe.1G587900.1.p	1	glycosyl hydrolase 9A1
Pyrus x bretschneideri	Pbr026642.2	1	-
Rosa multiflora	Rmu_sc0003627.1_g000012.1	1	-
Rubus occidentalis	Ro05_G16072	1	-
Fragaria vesca	mrna29283.1	1	glycosyl hydrolase 9A1
Vitis vinifera	GSVIVT01023102001	1	glycosyl hydrolase 9A1
Solanum lycopersicum	Solyc01g102580.2.1	1	glycosyl hydrolase 9A1
Populus trichocarpa	Potri.003G151700.1	1	glycosyl hydrolase 9A1
Nicotiana benthamiana	Niben101Scf03753g00018.1	1	Endoglucanase 25
Nicotiana benthamiana	Niben101Scf04481g00023.1	0.881	Endoglucanase 25
Oryza sativa	LOC_Os03g21210.1	1	"endoglucanase, putative, expressed"
Zea mays	GRMZM2G003379_P01	1	-
Zea mays	GRMZM2G099101_P01	0.708	"Endo-1,4-beta-glucanase "

Gene Ontology

GO term	Description	Category
GO:0005975	carbohydrate metabolic process	biological_process
GO:0003824	catalytic activity	molecular_function

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.15	Glyco_hydro_9	113	586	5.80E-123

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	68.1167
SRR5252888	dormant buds	no	dormant buds(0 month)	39.2079
SRR5252889	dormant buds	no	dormant buds(0 month)	35.8955
SRR5252886	dormant buds	no	dormant buds(1 months)	58.1457
SRR5252887	dormant buds	no	dormant buds(1 months)	55.7917
SRR5252884	dormant buds	no	dormant buds(2 months)	33.3378
SRR5252882	dormant buds	no	dormant buds(3 months)	37.3502
SRR5252883	dormant buds	no	dormant buds(3 months)	32.0246
SRR5252880	dormant buds	no	dormant buds(4 months)	29.3307
SRR5252881	dormant buds	no	dormant buds(4 months)	30.7186
SRR5252878	bud break	no	bud break	39.6337
SRR5252879	bud break	no	bud break	42.5601
SRR3744766	flower	no	mature	47.8957
SRR3744767	flower	no	mature	49.2448
SRR3744768	flower	no	mature	49.2598
SRR6308190	stigmas	no	open flowers	35.7074
SRR6308181	styles	no	open flowers	44.5876
SRR6308188	filaments	no	open flowers	70.7958
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	102.338
SRR6308192	pollen	no	open flowers	19.2729
SRR6308191	petals	no	open flowers	75.7119
SRR6308194	sepals	no	open flowers	71.3797
SRR6308193	receptacles	no	open flowers	44.1143
SRR6308189	ovaries	no	open flowers	51.2232
SRR3384922	fruit	no	1 week after full bloom	71.8837
SRR3384921	fruit	no	2 week after full bloom	59.8277
SRR3384920	fruit	no	3 week after full bloom	64.1919
SRR3384919	fruit	no	4 week after full bloom	83.6378
SRR3384923	fruit	no	5 week after full bloom	74.6505
SRR3384918	fruit	no	6 week after full bloom	105.592
SRR3384917	fruit	no	8 week after full bloom	82.2831
SRR3384916	fruit	no	10 week after full bloom	112.24
SRR3384915	fruit	no	12 week after full bloom	113.21
SRR3384914	fruit	no	14 week after full bloom	117.46
SRR3384913	fruit	no	16 week after full bloom	127.929
SRR3384912	fruit	no	18 week after full bloom	128.662
SRR3384911	fruit	no	19 week after full bloom	98.5368
SRR3384910	fruit	no	20 week after full bloom	143.884
SRR768128	whole fruit	no	25 days post anthesis	67.8053
SRR768129	whole fruit	no	35 days post anthesis	71.2121
SRR768130	whole fruit	no	60 days post anthesis	98.9894
SRR768131	whole fruit	no	87 days post anthesis	124.062
SRR7343308	immature fruit flesh	no	immature	116.406
SRR7343309	immature fruit flesh	no	immature	108.056
SRR6320494	ripe fruit flesh	no	mature	81.726
SRR5405143	ripe fruit peel	no	mature	101.879
SRR6320572	ripe fruit peel	no	mature	149.827
SRR7403504	fruit	uninfected	mature	66.066
SRR7403506	fruit	uninfected	mature	67.4184
SRR7403507	fruit	uninfected	mature	69.3734
SRR7403500	fruit	infected with penicillium expansum	mature	41.8958
SRR7403501	fruit	infected with penicillium expansum	mature	35.7541
SRR7403508	fruit	infected with penicillium expansum	mature	39.235
SRR7403502	fruit	infected with penicillium expansum	mature	47.236
SRR7403503	fruit	infected with penicillium expansum	mature	50.7804
SRR7403505	fruit	infected with penicillium expansum	mature	45.5714
SRR1613973	Central seeds	no	20DAPF	32.8386
SRR1613974	Central seeds	no	20DAPF	31.2903
SRR1613975	Central seeds	no	20DAPF	34.3579
SRR1613976	Lateral seeds	no	20DAPF	31.1882
SRR1613977	Lateral seeds	no	20DAPF	28.333
SRR1613978	Lateral seeds	no	20DAPF	27.9611
SRR3744786	stem	no	mature	38.3143
SRR3744787	stem	no	mature	37.6219
SRR3744772	stem	no	mature	38.0967
SRX765691	seedling shoot apex	no	4-6 week old seedling	55.2919
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	66.2315
SRR1089478	leaf	Virus-free	plantlets	44.3045
SRR1089477	leaf	ASGV-infected	plantlets	38.732
SRR767660	leaf	uninfected	fully developed	52.8583
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	94.2487
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	47.3238
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	32.1747
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	23.6501
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	29.7882
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	36.2402
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	34.3128
SRR6308182	young leaf	no	immature leaves	57.6425
SRR3744769	leaf	no	mature	42.2444
SRR3744770	leaf	no	mature	43.152
SRR3744771	leaf	no	mature	43.5671
SRR5405145	leaf	no	mature	75.2205
SRR6320561	leaf	no	mature	100.68