Gene detail

Detail information of MD09G1152600 Annotation

Gene ID	Annotation
MD09G1152600	xyloglucan endotransglucosylase/hydrolase 16

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0090	xyloglucan:xyloglucosyl transferase activity xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] cellular glucan metabolic process cell wall transferase activity ribonuclease T2 activity hydrolase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD09G1152600	mRNA	Chr09	12137760	12139185	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH16

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.3G171800.1.p	1	xyloglucan endotransglucosylase/hydrolase 16
Prunus persica	Prupe.3G172000.1.p	1	xyloglucan endotransglucosylase/hydrolase 15
Prunus persica	Prupe.3G171600.1.p	1	xyloglucan endotransglucosylase/hydrolase 16
Prunus persica	Prupe.3G171500.1.p	0.774	xyloglucan endotransglucosylase/hydrolase 16
Pyrus x bretschneideri	Pbr029665.1	1	-
Rosa multiflora	Rmu_sc0002516.1_g000015.1	1	-
Rosa multiflora	Rmu_sc0002516.1_g000017.1	1	-
Rosa multiflora	Rmu_sc0000940.1_g000002.1	0.906	-
Rubus occidentalis	Ro06_G28527	1	-
Fragaria vesca	mrna28697.1	1	xyloglucan endotransglucosylase/hydrolase 16
Solanum lycopersicum	Solyc12g017240.1.1	1	xyloglucan endotransglucosylase/hydrolase 15
Solanum lycopersicum	Solyc07g056000.2.1	1	xyloglucan endotransglucosylase/hydrolase 15
Nicotiana benthamiana	Niben101Scf07244g00001.1	1	Xyloglucan endotransglucosylase/hydrolase protein 22
Nicotiana benthamiana	Niben101Scf07244g01004.1	0.745	Xyloglucan endotransglucosylase/hydrolase protein 22

Gene Ontology

GO term	Description	Category
GO:0048046	apoplast	cellular component
GO:0005618	cell wall	cellular component
GO:0016762	xyloglucan:xyloglucosyl transferase activity	molecular_function
GO:0006073	cellular glucan metabolic process	biological_process

KEGG

KO	Description	Enzyme
K08235	xyloglucan:xyloglucosyl transferase	EC:2.4.1.207

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00722.17	Glyco_hydro_16	33	211	4.70E-62

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	1.35243
SRR5252888	dormant buds	no	dormant buds(0 month)	0.227059
SRR5252889	dormant buds	no	dormant buds(0 month)	0.350714
SRR5252886	dormant buds	no	dormant buds(1 months)	1.34602
SRR5252887	dormant buds	no	dormant buds(1 months)	12.3641
SRR5252884	dormant buds	no	dormant buds(2 months)	0.489557
SRR5252882	dormant buds	no	dormant buds(3 months)	2.45499
SRR5252883	dormant buds	no	dormant buds(3 months)	9.54131
SRR5252880	dormant buds	no	dormant buds(4 months)	0.49002
SRR5252881	dormant buds	no	dormant buds(4 months)	0.181301
SRR5252878	bud break	no	bud break	0.813458
SRR5252879	bud break	no	bud break	0.451018
SRR3744766	flower	no	mature	27.3115
SRR3744767	flower	no	mature	27.7387
SRR3744768	flower	no	mature	29.5545
SRR6308190	stigmas	no	open flowers	41.8941
SRR6308181	styles	no	open flowers	55.2422
SRR6308188	filaments	no	open flowers	18.6663
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	219.05
SRR6308192	pollen	no	open flowers	0.978953
SRR6308191	petals	no	open flowers	225.241
SRR6308194	sepals	no	open flowers	154.789
SRR6308193	receptacles	no	open flowers	12.4199
SRR6308189	ovaries	no	open flowers	29.3711
SRR3384922	fruit	no	1 week after full bloom	44.5151
SRR3384921	fruit	no	2 week after full bloom	23.2216
SRR3384920	fruit	no	3 week after full bloom	3.35915
SRR3384919	fruit	no	4 week after full bloom	5.80194
SRR3384923	fruit	no	5 week after full bloom	1.66811
SRR3384918	fruit	no	6 week after full bloom	2.49974
SRR3384917	fruit	no	8 week after full bloom	2.06228
SRR3384916	fruit	no	10 week after full bloom	8.37208
SRR3384915	fruit	no	12 week after full bloom	18.4643
SRR3384914	fruit	no	14 week after full bloom	27.9761
SRR3384913	fruit	no	16 week after full bloom	53.4098
SRR3384912	fruit	no	18 week after full bloom	35.5104
SRR3384911	fruit	no	19 week after full bloom	4.80732
SRR3384910	fruit	no	20 week after full bloom	4.08298
SRR768128	whole fruit	no	25 days post anthesis	1.28852
SRR768129	whole fruit	no	35 days post anthesis	0.909632
SRR768130	whole fruit	no	60 days post anthesis	1.86399
SRR768131	whole fruit	no	87 days post anthesis	4.46422
SRR7343308	immature fruit flesh	no	immature	0.45299
SRR7343309	immature fruit flesh	no	immature	0
SRR6320494	ripe fruit flesh	no	mature	1.72495
SRR5405143	ripe fruit peel	no	mature	0.507094
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0.594738
SRR7403506	fruit	uninfected	mature	0.314127
SRR7403507	fruit	uninfected	mature	0.372972
SRR7403500	fruit	infected with penicillium expansum	mature	30.3034
SRR7403501	fruit	infected with penicillium expansum	mature	26.884
SRR7403508	fruit	infected with penicillium expansum	mature	31.1262
SRR7403502	fruit	infected with penicillium expansum	mature	9.08116
SRR7403503	fruit	infected with penicillium expansum	mature	8.21577
SRR7403505	fruit	infected with penicillium expansum	mature	7.93202
SRR1613973	Central seeds	no	20DAPF	0.478562
SRR1613974	Central seeds	no	20DAPF	0.908068
SRR1613975	Central seeds	no	20DAPF	0.914005
SRR1613976	Lateral seeds	no	20DAPF	8.21674
SRR1613977	Lateral seeds	no	20DAPF	8.15944
SRR1613978	Lateral seeds	no	20DAPF	10.0885
SRR3744786	stem	no	mature	1.92094
SRR3744787	stem	no	mature	1.44371
SRR3744772	stem	no	mature	1.68573
SRX765691	seedling shoot apex	no	4-6 week old seedling	16.763
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	0.17632
SRR1089478	leaf	Virus-free	plantlets	39.0428
SRR1089477	leaf	ASGV-infected	plantlets	44.6306
SRR767660	leaf	uninfected	fully developed	2.67855
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.214346
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	4.63557
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.448546
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.55439
SRR6308182	young leaf	no	immature leaves	1.10738
SRR3744769	leaf	no	mature	1.19772
SRR3744770	leaf	no	mature	1.72536
SRR3744771	leaf	no	mature	0.9453
SRR5405145	leaf	no	mature	2.88023
SRR6320561	leaf	no	mature	7.86382