Gene detail

Detail information of MD10G1063800 Annotation

Gene ID	Annotation
MD10G1063800	glycosyl hydrolase 9B18

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0424	endoglucanase [EC:3.2.1.4] hydrolase activity

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD10G1063800	mRNA	Chr10	8666995	8670721	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH9

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G39010.1	1	AtGH9B18;GH9B18\|glycosyl hydrolase 9B18
Prunus persica	Prupe.8G085400.1.p	1	glycosyl hydrolase 9B18
Pyrus communis	PCP005363.1	1	-
Pyrus x bretschneideri	Pbr022356.1	1	-
Rosa multiflora	Rmu_sc0001833.1_g000001.1	1	-
Rubus occidentalis	Ro02_G23034	1	-
Fragaria vesca	mrna01563.1	1	glycosyl hydrolase 9B18
Vitis vinifera	GSVIVT01024179001	1	glycosyl hydrolase 9B18
Solanum lycopersicum	Solyc01g110340.2.1	1	glycosyl hydrolase 9B18
Populus trichocarpa	Potri.009G123900.1	1	glycosyl hydrolase 9B18
Nicotiana benthamiana	Niben101Scf04664g01005.1	1	Endoglucanase 24
Nicotiana benthamiana	Niben101Scf21401g00003.1	0.911	Endoglucanase 24
Oryza sativa	LOC_Os09g36060.1	1	"endoglucanase, putative, expressed"
Zea mays	GRMZM2G048165_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005975	carbohydrate metabolic process	biological_process
GO:0003824	catalytic activity	molecular_function

KEGG

KO	Description	Enzyme
K01179	endoglucanase	EC:3.2.1.4

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.15	Glyco_hydro_9	33	489	6.90E-138

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	2.48125
SRR5252888	dormant buds	no	dormant buds(0 month)	0.409421
SRR5252889	dormant buds	no	dormant buds(0 month)	0.474292
SRR5252886	dormant buds	no	dormant buds(1 months)	0.4623
SRR5252887	dormant buds	no	dormant buds(1 months)	0.122834
SRR5252884	dormant buds	no	dormant buds(2 months)	0.0980827
SRR5252882	dormant buds	no	dormant buds(3 months)	0.295115
SRR5252883	dormant buds	no	dormant buds(3 months)	0.160789
SRR5252880	dormant buds	no	dormant buds(4 months)	1.66899
SRR5252881	dormant buds	no	dormant buds(4 months)	0.871767
SRR5252878	bud break	no	bud break	3.52029
SRR5252879	bud break	no	bud break	5.09639
SRR3744766	flower	no	mature	0.451633
SRR3744767	flower	no	mature	0.10773
SRR3744768	flower	no	mature	0.198264
SRR6308190	stigmas	no	open flowers	0
SRR6308181	styles	no	open flowers	0.269363
SRR6308188	filaments	no	open flowers	0
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0
SRR6308192	pollen	no	open flowers	0
SRR6308191	petals	no	open flowers	0
SRR6308194	sepals	no	open flowers	0
SRR6308193	receptacles	no	open flowers	0.267176
SRR6308189	ovaries	no	open flowers	0.271445
SRR3384922	fruit	no	1 week after full bloom	3.13112
SRR3384921	fruit	no	2 week after full bloom	4.88449
SRR3384920	fruit	no	3 week after full bloom	8.07512
SRR3384919	fruit	no	4 week after full bloom	4.541
SRR3384923	fruit	no	5 week after full bloom	2.5448
SRR3384918	fruit	no	6 week after full bloom	1.58814
SRR3384917	fruit	no	8 week after full bloom	0.74363
SRR3384916	fruit	no	10 week after full bloom	0.764779
SRR3384915	fruit	no	12 week after full bloom	0.238126
SRR3384914	fruit	no	14 week after full bloom	0.184759
SRR3384913	fruit	no	16 week after full bloom	0
SRR3384912	fruit	no	18 week after full bloom	0
SRR3384911	fruit	no	19 week after full bloom	0.0979356
SRR3384910	fruit	no	20 week after full bloom	0.0766808
SRR768128	whole fruit	no	25 days post anthesis	9.53774
SRR768129	whole fruit	no	35 days post anthesis	7.30734
SRR768130	whole fruit	no	60 days post anthesis	1.12305
SRR768131	whole fruit	no	87 days post anthesis	0.0768481
SRR7343308	immature fruit flesh	no	immature	5.16743
SRR7343309	immature fruit flesh	no	immature	2.44216
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0.303411
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	3.20474
SRR1613974	Central seeds	no	20DAPF	2.901
SRR1613975	Central seeds	no	20DAPF	2.96354
SRR1613976	Lateral seeds	no	20DAPF	3.03629
SRR1613977	Lateral seeds	no	20DAPF	3.03781
SRR1613978	Lateral seeds	no	20DAPF	3.04448
SRR3744786	stem	no	mature	0.950428
SRR3744787	stem	no	mature	1.23265
SRR3744772	stem	no	mature	1.43781
SRX765691	seedling shoot apex	no	4-6 week old seedling	3.19558
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	3.41029
SRR1089478	leaf	Virus-free	plantlets	0.885932
SRR1089477	leaf	ASGV-infected	plantlets	1.16825
SRR767660	leaf	uninfected	fully developed	2.69628
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	3.25358
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.117016
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.408278
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.687539
SRR6308182	young leaf	no	immature leaves	2.97335
SRR3744769	leaf	no	mature	0.323928
SRR3744770	leaf	no	mature	0.499576
SRR3744771	leaf	no	mature	0.380035
SRR5405145	leaf	no	mature	3.62562
SRR6320561	leaf	no	mature	3.25317