Gene detail

Detail information of MD15G1287400 Annotation

Gene ID	Annotation
MD15G1287400	Nucleotide-diphospho-sugar transferases superfamily protein

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0163	pyrimidine ribonucleotide biosynthetic process

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1287400	mRNA	Chr15	26425888	26430956	+

Sequences

CDS:

MD15G1287400

TCTGCGCCTTTCTCTCTCCTCTGTTTGAAAGTGGACAAAGAAATGCTGAGAATAAAACCGAAAAACCAACCAATTCTAACAACTTCGAATTTCATTCTTAAATTCGAAGAAATCTCTGATTAAAATTAACAAATCACATTTTAATTACGTCTTAATCATCCCCACCATCCCCAACCTCTCTCTCTCTCCTTTCTTCCTCTCTCTACAGAAGCTCAACTAACGTCAAAGGAACTCAAGGGATATAGTGCTCCAAAGACCAACACAACAAACGAACCCACCTCTCCAACTCTTGACCTCTGCTCTCTCTCTCTAGGATTTGTGTGTGAGAGAGAGATTATGAAGCTCTCTGCTTTGCACCAGAGCTACCTCACCCGGCGGAGCAACAGCTTCAGGGGATCGGCGCCTTTGGACTCCTCATCTGACGGCAAGTCGCCGCCGACGCTGTCCTGGCTCCTACTCCATGGCCTCTGCTGCCTCGTCAGCCTCGTCCTCGGCTTCCGCTTCTCTCGCCTCGTCTTCTTCTTCCTCTTCTCCACCTCCGCTTCCAATCTCTATCCGGCGCCGTTTCGGTCAGTTGCTGATCTCACCGTCAGAAATCTAGAGCTCCCCGCGAACCCGGTCCAGAATCTCGAGTTTAATCTCAACAGGAACGCCACCACCGCCAGCTCCAGCAGCCGGGTCATCGTCGGGCGGCATGGGATCCGAATCCGGCCGTGGCCGCACCCGAACCCGACCGAGACCATGAAGGCGCACCGCATAATTGAGACGGTTCAGAGGGAGCAGAGGAGGCAGTTCGGAGTCAGCAACCCCAAAACGGTCATCGCCGTCACGCCCACCTACGCTCGGACCTTCCAGGCGCTGCATTTGACTGGCGTTATGCACTCGCTGATGCTGGTGCCGTACGACGTCGTCTGGATCGTCATCGAGGCCGGCGGGGTCACCAAGGAGACGGCCTCGATTGTGTCCAAGTCGGGGCTCCGGATCATCCACAAGGGGTTTGATCAACGGATGCCTAATACTTGGGATGGCCGCCACCTGCTGGAGGCTCGGATGCGGCTTCGTGCTTTGAGAATTGTGAGAGAGCAGAAGCTGGACGGGATAGTGATGTTTGCGGACGATAGTAATATGCACAGTATGGAGCTTTTTGATGAGTTGCAGAATGTGAAATGGTTTGGTGCTGTTTCGGTGGGAATACTTGCTCATTCAGAGAATACAGATGAATCGTCTGAGTCCACAGTTCAGAAAAAGGAAGAAGGGGAGAACCTGTCAATGCCAATTCAAGGTCCTGCTTGTAACTCTTCCAATAAGTTGATTGGTTGGCACACCTTTAACACCTTGCCCTATGAGGGAAAGAGCGCAAATTACATTGATGATCGAGCACCTGTACTACCCAATAAGCTGGAGTGGGCTGGGTTTGTATTGAATTCACGGTTGCTTTGGAGTGAAGCTGAAGATAAACCAGAGTGGGTTAATGATCTAGATGGTATTGGTGGGGCTGATGAGCTGATAGTGAGCCCTCTATTCTTGTTGAAGGACTTGTCTTTGGTTGAGCCACTTGGAAATTGTGGACGCCAAGTTTTGCTCTGGTGGCTCCGTGTTGAAGCTCGTTTTGATAGTAAATTTCCTCCCAGATGGACTATCAACCCACCTTTGGAAATCACTGTACCATCAAAACGTACACCATGGCCTGATGCTCCACCTGAACTCCCATCTAATGAAAAAACAGAAACTGCAGTTGAAGAGCACACAGTGAAGCGTCCTATAAAAATCCGTGCACCCAGAACGAAGAGAAGTTCTCGAAGCAAGAGGAAGCACGAGACAAAAACGATTGACATGCAGGCTTCTGCAAGGCATACTGAACAGGACTGAAACACTTGCCATCAACGCTCAAAATATGTAGTGCTGTGTGAATTTGAGGCTTCGGTCTTCAGCATTGGGAAAATTTATATGAAGATGCATCGAAAACTTAGTTGAAGAGGCCGAGAAGTGTATGCTGTCAGCAGGCACGTACAGTGAGGTACCTTTATTACGGGGGCTAGTTGATTGTGCATTCGAGTTTGATTCTTACCTTAGTTTCACAAATTTTTTCTTTTATTTTTATTTTTATTTTTATTTTTTGGGATGTGGGTGCTTGATTTTCTGGCCTCATGCAAAATGTAGGTCGTCGTCGTGACCAATTGAGTCTGCTGCATCTTCTGCCTTGCAGGAAGTTGTATTTTATATGCTCCAAAATGTTACATATTCTTCTAAATAGAAATCATAGAGTTGTGTTCAGTTGGATTGCGTAGAAATGAAACGATACAAAATATAATAACAACTTCCCCATTCATTTC

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT43

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT4G36890.1	1	IRX14\|irregular xylem 14
Pyrus x bretschneideri	Pbr015298.1	1	-
Rosa multiflora	Rmu_sc0004015.1_g000001.1	1	-
Rosa multiflora	Rmu_sc0016473.1_g000007.1	0.655	-
Rubus occidentalis	Ro01_G04146	1	-
Fragaria vesca	mrna23860.1	1	Nucleotide-diphospho-sugar transferases superfamily protein
Vitis vinifera	GSVIVT01022064001	1	Nucleotide-diphospho-sugar transferases superfamily protein
Solanum lycopersicum	Solyc11g011850.1.1	1	Nucleotide-diphospho-sugar transferases superfamily protein
Populus trichocarpa	Potri.005G141500.1	1	Nucleotide-diphospho-sugar transferases superfamily protein
Nicotiana benthamiana	Niben101Scf07841g02006.1	1	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
Oryza sativa	LOC_Os06g47340.1	1	"glycosyltransferase family 43 protein, putative, expressed"
Zea mays	GRMZM2G113655_P01	1	Glycosyltransferase
Zea mays	GRMZM2G150302_P01	0.888	-

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	cellular component
GO:0015018	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	molecular_function

KEGG

KO	Description	Enzyme
K20871	"putative beta-1,4-xylosyltransferase IRX14"	EC:2.4.2.-

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	7.2317
SRR5252888	dormant buds	no	dormant buds(0 month)	6.37211
SRR5252889	dormant buds	no	dormant buds(0 month)	5.84893
SRR5252886	dormant buds	no	dormant buds(1 months)	5.39633
SRR5252887	dormant buds	no	dormant buds(1 months)	6.53442
SRR5252884	dormant buds	no	dormant buds(2 months)	4.57959
SRR5252882	dormant buds	no	dormant buds(3 months)	3.99071
SRR5252883	dormant buds	no	dormant buds(3 months)	4.51266
SRR5252880	dormant buds	no	dormant buds(4 months)	3.90761
SRR5252881	dormant buds	no	dormant buds(4 months)	4.25388
SRR5252878	bud break	no	bud break	7.11056
SRR5252879	bud break	no	bud break	6.59837
SRR3744766	flower	no	mature	6.03961
SRR3744767	flower	no	mature	6.4125
SRR3744768	flower	no	mature	5.40958
SRR6308190	stigmas	no	open flowers	5.05122
SRR6308181	styles	no	open flowers	4.50353
SRR6308188	filaments	no	open flowers	5.89864
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	5.45321
SRR6308192	pollen	no	open flowers	0.910443
SRR6308191	petals	no	open flowers	3.12122
SRR6308194	sepals	no	open flowers	1.86627
SRR6308193	receptacles	no	open flowers	3.18228
SRR6308189	ovaries	no	open flowers	5.59153
SRR3384922	fruit	no	1 week after full bloom	2.07936
SRR3384921	fruit	no	2 week after full bloom	3.01375
SRR3384920	fruit	no	3 week after full bloom	2.4857
SRR3384919	fruit	no	4 week after full bloom	3.44463
SRR3384923	fruit	no	5 week after full bloom	4.45629
SRR3384918	fruit	no	6 week after full bloom	3.87663
SRR3384917	fruit	no	8 week after full bloom	5.40713
SRR3384916	fruit	no	10 week after full bloom	7.51725
SRR3384915	fruit	no	12 week after full bloom	7.03527
SRR3384914	fruit	no	14 week after full bloom	6.99997
SRR3384913	fruit	no	16 week after full bloom	10.077
SRR3384912	fruit	no	18 week after full bloom	13.3645
SRR3384911	fruit	no	19 week after full bloom	12.2934
SRR3384910	fruit	no	20 week after full bloom	13.3523
SRR768128	whole fruit	no	25 days post anthesis	4.75784
SRR768129	whole fruit	no	35 days post anthesis	3.31216
SRR768130	whole fruit	no	60 days post anthesis	11.3409
SRR768131	whole fruit	no	87 days post anthesis	11.951
SRR7343308	immature fruit flesh	no	immature	3.32948
SRR7343309	immature fruit flesh	no	immature	5.18917
SRR6320494	ripe fruit flesh	no	mature	18.179
SRR5405143	ripe fruit peel	no	mature	15.3034
SRR6320572	ripe fruit peel	no	mature	21.0467
SRR7403504	fruit	uninfected	mature	10.4213
SRR7403506	fruit	uninfected	mature	11.6293
SRR7403507	fruit	uninfected	mature	12.3337
SRR7403500	fruit	infected with penicillium expansum	mature	38.3256
SRR7403501	fruit	infected with penicillium expansum	mature	29.8271
SRR7403508	fruit	infected with penicillium expansum	mature	31.5762
SRR7403502	fruit	infected with penicillium expansum	mature	32.7461
SRR7403503	fruit	infected with penicillium expansum	mature	35.0781
SRR7403505	fruit	infected with penicillium expansum	mature	36.2396
SRR1613973	Central seeds	no	20DAPF	1.61315
SRR1613974	Central seeds	no	20DAPF	1.41974
SRR1613975	Central seeds	no	20DAPF	1.56366
SRR1613976	Lateral seeds	no	20DAPF	1.97061
SRR1613977	Lateral seeds	no	20DAPF	1.58445
SRR1613978	Lateral seeds	no	20DAPF	1.58954
SRR3744786	stem	no	mature	5.02227
SRR3744787	stem	no	mature	5.22154
SRR3744772	stem	no	mature	5.01741
SRX765691	seedling shoot apex	no	4-6 week old seedling	4.99038
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	6.52095
SRR1089478	leaf	Virus-free	plantlets	3.87105
SRR1089477	leaf	ASGV-infected	plantlets	5.05723
SRR767660	leaf	uninfected	fully developed	4.34145
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	10.6789
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	5.59859
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	3.56043
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	6.28737
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	7.52569
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	4.21703
SRR6308182	young leaf	no	immature leaves	3.5786
SRR3744769	leaf	no	mature	4.85893
SRR3744770	leaf	no	mature	4.39216
SRR3744771	leaf	no	mature	5.08683
SRR5405145	leaf	no	mature	7.48516
SRR6320561	leaf	no	mature	6.06409