Gene detail

Detail information of MD15G1314200 Annotation

Gene ID	Annotation
MD15G1314200	Protein of unknown function

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
Co-expression network	CFinderM0499	ATP-dependent 3'-5' DNA helicase activity potassium channel activity oxidoreductase activity glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] bloom syndrome protein [EC:3.6.4.12]

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD15G1314200	mRNA	Chr15	31779193	31786723	-

Sequences

CDS:

MD15G1314200

GAGTTGAACGACCCATCCCCCAATTAACCCTACCCATTTGCCATTGCAATCTCGCTCTCATTGAAACTGGGCCGCGGACCTCATCACAGTCATTGAAGTCGGCACGACTTCTGCGACGATGACCTCCATCACCTCCGTGGAGTTGAATTTCGTAGTCTTTCGTTACCTTCAGTAATCAGGCGGATTATGTTCAAGAATACAGCAGCTATGTGGGATTTATGAGGGATGGAGCACAGTGGTTTGTGGAGAACACAGACATTAAACTTGTTGGAAATGATGACCCCCTCCAAGGAGAAATAGCATGGAATAGGACGCCACGAGAGCTTGGTCTTTCAGCTTATGCTCTTCAACAACTTGGTGGTTCACATGCTGCTACACCAAACCAAATTAGAGAATTAATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTGCAGGTTTGTATATGTGATTATCCATCTGTTTTTAATCGTAATTTGGCTGATGTGAATAAAATTTTATACAATCATGACGGAAATTGCAAGCCATTTTGCATGCTATTAGTGGTGAATCTTTTTACACATACATGTGATTATCCTCGTTAAATATATTTTTTTTAAACATGTATTTTCGTATTAAAAAAAGGGCACATTTTGAGCTTTCGCACTGGGCACCAACAAACTCAGGACCGGCCCTGGTCTTACCATGGACTTAACTGTAAAGTCGTTTATCCAACGAAAATGCAATCAGAGAACAATGTGAAGTAAGATCATCGAAGAGGAGATTGATATGCTCAAAGATGCTAATTTCATTATTGAGGTCCACTACCCAGACTTGCTGGCCAATGTGGTGCTTGTGCAAAAGAAGAACAGAAAATGAAGAATATGTGTCGACTTTTCTTATTTAAACAAAGCATGTCCCAAAAACCCTTATATTTTGCCTCAGATTGACTTATTAGTCAATTTCACAACAGGGCACGAGCAGTTAAGCTTTATGGATGCTTATTCCAACTACAAGCCAGATATGGGTAAACATCATTTTGGGCTTAAAAACATAGGGGCATCTATCTGAGGCTAGCCAACTAGATATTCAAGGAAAAGATTGGAGAAACGATGGAAGTATACATCAATAAAGTAGTAGTTAAGAGCAAAGAAAGAAATACCATTTCACTCACCTCTAAGAATATTTCAACCTACTCTAGAAGTACAATGTGAAGCTCAATCCAAAATAGTGCACTTCTGGAGTAGCGTCATGAAAGTTCTTAGGCCATATGGTCACAAAGCACGGAAATCAAACCAATTTGGACCAGATCAAGGAGATCATGAAAATGAAGTCGCCTTGAAGGAAATCCAGAGCTTGGCTTAAAGGCAGCTATTCTCAGTCGATTCCACTTACGGTCCACTGACAAGTGCTAACCCTTCTTTACTATAATAAAGAAGAACAAATTCCTACTCTGAACAGTTGAATTTGAAGAAACTTTCATGAAGTTAAGGGAATACATGCCTGATTCACCACTCTTATCCAAAACAGTGGGTGGGTAAGACCTGCACTTATTTTTGGTAGTGTCAGACTGCGGTCAGTGACACTCTAATTCAAGAAGACTCAAGGAAGCAGAAACTGATATATATAACACAAAACTTATACATTTATATTGCCCCTATTTCCGAAGTTTTATGCTATGTTTTCTTGTGAAATTGGTTGTTTGATGTGTCTAGTCCGTATTTTGTAAATAATGGACCGTAGAGAAGACTTTAGAGTCTTTTGGTGATTTTAAGGCTAAAAATGATCAAGGTTGTAAAGAACTGAAGTCAAGAAGTATTCCAACGATTAGTAGATGCTAATTTTTTCAATCCGCAATTTAATGGCTGTTGTTTGGGAATTATAACTGGAGCTGGAAGGTGTTTCGCAGAACTGTCATTTTTGTTGGGACATCACAAATTCATCAGGATGAACTAGGTGTTGTGTCACATATGTACGGAAATCTCTGGATGTCTAGTTTCAGTAAAATTTTACAGGTCATAATTCTGATGCTTCTAGAAGAAATTATACCTGTTTTAGTGCAAGGAGGTTGGTTTAGGAATTCTGCGATATTATTTGTCTAATGATATTGGGACTTCTGTTTAGGGGAATTCAACAATTGCAGCAAAGGTTTACTGAAACTCTATATTCCTTGGGCATTTATTTAAAATGGAAAGGAGCAATAGTGTGAAAGGAAGGGACTGACATCATCAGATTGCTTAGAGGATTGACCTAAGGAGGAAGCTAGACGCCAAGGGGTTCTCTAAGGGTTTTTCAATATCTTTCTCAGACTTTGTACTTATGACTTTCATAATTATGATTTCCTATAATTTGTTGGCTATGAGTAACTAAATGCTTTACTAGGGATTCGATGTAGCCTTCATGATGGTTCTATATCTTAGTTAACTTTATTCTTTTATCAATTTAAAGGTTTCTAGTTTCATTCATTGTGCTAAAATCATTCTTTATGTTCATGTTATTGATTAGCTACCTTTAATATAAATTTTTAGATGTATGAGACAAGGTTATAGTAGATGCCATACGCTTAGCCTTGAGATAGCTCTCTTGGATGAATGAATTGTTGTTGATGCAAATGATATGCTAAGACACTTTTTGGTTTTCTTTGTTATTCTTGCACTTAATGGATTTTTGATTATTGACTTAGACTAGACGCCATGGTTAAGTTGATAATTAAAAGTACTTGGTTATACCGGACGCCTAACGGACAATCATAATAAAGAAAGAACGAACCCTAGAACCTGAATTGAATTGTTCTTACTAAGTTATTTAATGACATAGAATTGGATTGATTTGGTGAAATCGGATACCTAGTGTTTCAACCATTGTTTTCAGAAATTATTTAAACACATTCTCTTTTTAATTTATTGCACTTTAGATTACTTGATCAACTTCTCTTTGGTTAATTATTTAAACTTCATAGTTTAGTTGTTTTTGTTATTTCTATTCTTGTGGGTACTGCATAATTGGACTTAGCTCCAGTTTGGGGTTGAGGTGCTTTAAAAAAAAGCTCCTATGAAAAAAAGCCCAAAGGGATTAGGTGTTTGGTAAACTTTGAAAATCAGCTTTTTTTCAAAGTTTGAGATCAAAATAAGCCAAAATGGGGAAGCTGCAAATAGCAGCTTCCAAAAGCCCAAAGCGGCTTTGAAGAGAAAAAACACGGGTGAACAGTAAAAAAGTTAATGAAATTTTTGAATAACCCAAAATTACCCCAAGACAGGTCTCTCTCGTAAACCCTAAAATTTTCTCGCCTCAGCTCTCTCTCGTATGTAGCCACTGCACCTCTTCCTCCTCACTGCCCTCTCGAAGAAAAGGTTGCGGCGTCGACCACCTTCTCAATTTTCCCAAGACCAGACGGTGCTTCCTCCCGTCTATTAATCTCCACCGCCACGGTTTCATCTTCTCCGTCTTGCTCTAGGTGTTATGGGCTGATGATTATTATAGGATGCTGCTTGTTTTTGGGTTGTTGGTATCGATGGCAAAGAAGGGGGCATCTTCATCAAATCCTGTGGCTACATGGAATGCCCACAATATATCTATATTTTGTGATGTTTGCATCAAGGAGGTTGAGGCCGAACATCGTCCGGGTACTCACTTTGACAAAGATGGATATGCAAATATTAGAGCTAACTTCAAGGCAGAGACAGGGCATGATTATGATAGAAAGCAACTGAAAAATAAGTGGGATGCACTTAAAATTGAGTGGAAGTTGTGGAAAGAGCTAATTGGTAAAGAAACTGGCCTAGGGTGGAATTCGAGCAAGGGCACCGTTGATGCCTCTGAGGAGTGGTGGAATAATAAAATTCAGATAAACAAAGAATATGGAAAATTGCGGAAAAAAGGCATTAGTCCTGAGATGGAGGATAAGTTAGATAGGATGTTCTCGAACACAGTTGCTACCGGTGAACATGCTTGGGCACCTTCATCTGGAGTACTACCACCAGAGTCAAGAGATGAATCTATAGGGCAAATTGATTTGGATGATGAGGAAGAAAGTGAGACCATGCAGGATCTAAGGCAAGCTACTAGGAAGGGGAAAAAAAGAGCGACCAACCAAGGAGATTTTCAAAAGAAGAAGGTTGATAAGAAGGGGAAAAAAAAATTGGAGGTGCTGCAAAAACTTTCTGGTCAAATTGACCGTCTTGTTGAAGTTTATGAAAGTAGGAGTTCTGCAAACTCATTGATGAGGCCGCCGCATATAGGCTGTAGTATTGCGGAAGCGATAGCATCTGTTGCACAATTGCCTGGTTGTGAGCCACCTAGCGAGTTATGGTTGTTTGCTACATGTTTATTTTGTAGTACAGAGAAGCGAGAGGTGTTTGCCACTATGACTAATCCTGAAGTGCAGCTGACTTGGTTGAAATATATGTTCAACAAACAACAATAGAGAGCTAAAACTATGAATTAGGACTATTTGTGGTTTGTACTTTGCATTAGGATTATGTGTTGAATGTTGCTTGTATTTTGTGTTTATTGAATGTTGGATTATATGTTGAATGTTGG

Protein:

Gene family

Gene family	Subfamily
--	--

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Prunus persica	Prupe.5G020800.2.p	1	-
Prunus persica	Prupe.5G020800.3.p	1	-
Prunus persica	Prupe.5G020800.1.p	1	-
Pyrus x bretschneideri	Pbr036596.1	1	-
Rosa multiflora	Rmu_sc0008636.1_g000003.1	1	-
Rosa multiflora	Rmu_sc0010960.1_g000003.1	1	-
Fragaria vesca	mrna34549.1	1	-
Populus trichocarpa	Potri.T098000.1	1	-
Populus trichocarpa	Potri.014G026000.1	0.993	-
Populus trichocarpa	Potri.003G006700.1	0.985	-
Populus trichocarpa	Potri.018G075600.1	0.947	-
Populus trichocarpa	Potri.001G402200.1	0.918	-
Populus trichocarpa	Potri.005G153700.1	0.907	-
Populus trichocarpa	Potri.017G008500.1	0.885	-
Populus trichocarpa	Potri.014G091900.1	0.885	-
Populus trichocarpa	Potri.005G135800.1	0.874	-
Populus trichocarpa	Potri.010G017700.1	0.874	-
Populus trichocarpa	Potri.001G236600.1	0.865	-
Populus trichocarpa	Potri.008G176600.1	0.856	-
Populus trichocarpa	Potri.001G238000.1	0.832	-
Populus trichocarpa	Potri.004G097600.1	0.792	-
Populus trichocarpa	Potri.001G297800.1	0.785	-
Populus trichocarpa	Potri.005G163200.1	0.77	-
Populus trichocarpa	Potri.015G012100.1	0.743	-
Populus trichocarpa	Potri.011G094000.1	0.69	-
Populus trichocarpa	Potri.017G072700.1	0.686	-
Populus trichocarpa	Potri.017G062600.1	0.639	-
Populus trichocarpa	Potri.001G393500.1	0.611	-
Nicotiana benthamiana	Niben101Scf03965g03004.1	1	Myb/SANT-like DNA-binding domain protein [Medicago truncatula]
Oryza sativa	LOC_Os04g16940.1	1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"
Oryza sativa	LOC_Os12g10550.1	1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"

Gene Ontology

GO term	Description	Category
--	--	--

KEGG

KO	Description	Enzyme
--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12776.3	Myb_DNA-bind_3	25	118	1.90E-26

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	0.796564
SRR5252888	dormant buds	no	dormant buds(0 month)	5.95303
SRR5252889	dormant buds	no	dormant buds(0 month)	7.21333
SRR5252886	dormant buds	no	dormant buds(1 months)	5.56295
SRR5252887	dormant buds	no	dormant buds(1 months)	4.84995
SRR5252884	dormant buds	no	dormant buds(2 months)	5.79059
SRR5252882	dormant buds	no	dormant buds(3 months)	5.47473
SRR5252883	dormant buds	no	dormant buds(3 months)	6.04626
SRR5252880	dormant buds	no	dormant buds(4 months)	5.98066
SRR5252881	dormant buds	no	dormant buds(4 months)	6.41291
SRR5252878	bud break	no	bud break	5.69952
SRR5252879	bud break	no	bud break	3.81248
SRR3744766	flower	no	mature	2.29756
SRR3744767	flower	no	mature	2.33111
SRR3744768	flower	no	mature	2.37975
SRR6308190	stigmas	no	open flowers	1.33751
SRR6308181	styles	no	open flowers	0.973272
SRR6308188	filaments	no	open flowers	0.919995
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	1.62672
SRR6308192	pollen	no	open flowers	4.71843
SRR6308191	petals	no	open flowers	1.18225
SRR6308194	sepals	no	open flowers	1.30464
SRR6308193	receptacles	no	open flowers	1.54827
SRR6308189	ovaries	no	open flowers	1.03215
SRR3384922	fruit	no	1 week after full bloom	0.571329
SRR3384921	fruit	no	2 week after full bloom	0.487247
SRR3384920	fruit	no	3 week after full bloom	0.577539
SRR3384919	fruit	no	4 week after full bloom	0.76223
SRR3384923	fruit	no	5 week after full bloom	0.75387
SRR3384918	fruit	no	6 week after full bloom	0.839212
SRR3384917	fruit	no	8 week after full bloom	0.652404
SRR3384916	fruit	no	10 week after full bloom	0.817257
SRR3384915	fruit	no	12 week after full bloom	0.96697
SRR3384914	fruit	no	14 week after full bloom	0.868355
SRR3384913	fruit	no	16 week after full bloom	0.59321
SRR3384912	fruit	no	18 week after full bloom	0.825448
SRR3384911	fruit	no	19 week after full bloom	0.515526
SRR3384910	fruit	no	20 week after full bloom	0.648712
SRR768128	whole fruit	no	25 days post anthesis	1.33756
SRR768129	whole fruit	no	35 days post anthesis	0.206555
SRR768130	whole fruit	no	60 days post anthesis	1.00045
SRR768131	whole fruit	no	87 days post anthesis	0.463413
SRR7343308	immature fruit flesh	no	immature	1.53248
SRR7343309	immature fruit flesh	no	immature	1.12051
SRR6320494	ripe fruit flesh	no	mature	0.984372
SRR5405143	ripe fruit peel	no	mature	1.19292
SRR6320572	ripe fruit peel	no	mature	0.344291
SRR7403504	fruit	uninfected	mature	0.626153
SRR7403506	fruit	uninfected	mature	0.844607
SRR7403507	fruit	uninfected	mature	0.664524
SRR7403500	fruit	infected with penicillium expansum	mature	0.697124
SRR7403501	fruit	infected with penicillium expansum	mature	0.701993
SRR7403508	fruit	infected with penicillium expansum	mature	0.772409
SRR7403502	fruit	infected with penicillium expansum	mature	0.803111
SRR7403503	fruit	infected with penicillium expansum	mature	0.368004
SRR7403505	fruit	infected with penicillium expansum	mature	0.764955
SRR1613973	Central seeds	no	20DAPF	0.467323
SRR1613974	Central seeds	no	20DAPF	0.627854
SRR1613975	Central seeds	no	20DAPF	0.450421
SRR1613976	Lateral seeds	no	20DAPF	0.343876
SRR1613977	Lateral seeds	no	20DAPF	0.452227
SRR1613978	Lateral seeds	no	20DAPF	0.565623
SRR3744786	stem	no	mature	3.8947
SRR3744787	stem	no	mature	3.8114
SRR3744772	stem	no	mature	4.24286
SRX765691	seedling shoot apex	no	4-6 week old seedling	0.70158
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	1.92341
SRR1089478	leaf	Virus-free	plantlets	0.100341
SRR1089477	leaf	ASGV-infected	plantlets	0.0778338
SRR767660	leaf	uninfected	fully developed	0.305566
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	0
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	0.321174
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	0
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	0.0886675
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	0.206567
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	0.302955
SRR6308182	young leaf	no	immature leaves	1.55676
SRR3744769	leaf	no	mature	3.00861
SRR3744770	leaf	no	mature	3.30191
SRR3744771	leaf	no	mature	3.20396
SRR5405145	leaf	no	mature	1.4842
SRR6320561	leaf	no	mature	0.748233