Gene detail

Detail information of MD16G1021500 Annotation

Gene ID	Annotation
MD16G1021500	glycosyl hydrolase 9B1

Network

Network Category	Global Network	Conditional network (different tissues and developmental stages)
Coexpression Positive	Top300 PCC genelist	Top300 PCC genelist
Coexpression Negative	Top300 PCC genelist	Top300 PCC genelist

Functional module

Method	Module ID	Function Annotation
--	--	--

Gene structure and chromatin state

more details in UCSC

details of chromatin state

Location

Gene	Type	Chr	Start	End	Strand
MD16G1021500	mRNA	Chr16	1529651	1533975	-

Sequences

CDS:

Protein:

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH9

Orthologous genes

Species	Gene ID	Score of Inparanoid	Annotation
Arabidopsis thaliana	AT1G70710.1	1	ATGH9B1;CEL1;GH9B1\|glycosyl hydrolase 9B1;CELLULASE 1
Prunus persica	Prupe.1G331000.1.p	1	glycosyl hydrolase 9B1
Pyrus communis	PCP006813.1	1	-
Pyrus x bretschneideri	Pbr012097.1	1	-
Rosa multiflora	Rmu_sc0009670.1_g000003.1	1	-
Rubus occidentalis	Ro04_G00290	1	-
Solanum lycopersicum	Solyc09g010210.2.1	1	glycosyl hydrolase 9B1
Solanum lycopersicum	Solyc09g075360.2.1	1	glycosyl hydrolase 9B13
Solanum lycopersicum	Solyc08g083210.2.1	1	glycosyl hydrolase 9B13
Populus trichocarpa	Potri.008G132700.1	1	glycosyl hydrolase 9B1
Oryza sativa	LOC_Os02g50040.1	1	"endoglucanase, putative, expressed"
Oryza sativa	LOC_Os06g14540.1	1	"endoglucanase, putative, expressed"
Zea mays	GRMZM2G076049_P01	1	-

Gene Ontology

GO term	Description	Category
GO:0005975	carbohydrate metabolic process	biological_process
GO:0003824	catalytic activity	molecular_function

KEGG

KO	Description	Enzyme
K01179	endoglucanase	EC:3.2.1.4

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00759.15	Glyco_hydro_9	39	492	3.70E-135

Expression pattern

SRA Experiment	Tissue	Stress	Stage	FPKM
SRR768136	whole seedling	no	seedling	122.494
SRR5252888	dormant buds	no	dormant buds(0 month)	0.142814
SRR5252889	dormant buds	no	dormant buds(0 month)	0.330885
SRR5252886	dormant buds	no	dormant buds(1 months)	0.362834
SRR5252887	dormant buds	no	dormant buds(1 months)	0.12854
SRR5252884	dormant buds	no	dormant buds(2 months)	0.513198
SRR5252882	dormant buds	no	dormant buds(3 months)	0.926477
SRR5252883	dormant buds	no	dormant buds(3 months)	0.0560863
SRR5252880	dormant buds	no	dormant buds(4 months)	2.36294
SRR5252881	dormant buds	no	dormant buds(4 months)	3.47802
SRR5252878	bud break	no	bud break	20.1588
SRR5252879	bud break	no	bud break	12.4251
SRR3744766	flower	no	mature	2.42957
SRR3744767	flower	no	mature	2.33224
SRR3744768	flower	no	mature	2.17223
SRR6308190	stigmas	no	open flowers	1.14595
SRR6308181	styles	no	open flowers	0.21123
SRR6308188	filaments	no	open flowers	0.634231
SRR6308187	anthers	no	buds 1-3 days prior to flower opening	0.109086
SRR6308192	pollen	no	open flowers	0.620271
SRR6308191	petals	no	open flowers	1.17473
SRR6308194	sepals	no	open flowers	0.875751
SRR6308193	receptacles	no	open flowers	5.65728
SRR6308189	ovaries	no	open flowers	1.13529
SRR3384922	fruit	no	1 week after full bloom	18.8887
SRR3384921	fruit	no	2 week after full bloom	46.2639
SRR3384920	fruit	no	3 week after full bloom	16.0281
SRR3384919	fruit	no	4 week after full bloom	13.5772
SRR3384923	fruit	no	5 week after full bloom	9.03825
SRR3384918	fruit	no	6 week after full bloom	16.0354
SRR3384917	fruit	no	8 week after full bloom	6.54972
SRR3384916	fruit	no	10 week after full bloom	2.94854
SRR3384915	fruit	no	12 week after full bloom	1.74434
SRR3384914	fruit	no	14 week after full bloom	0.386688
SRR3384913	fruit	no	16 week after full bloom	1.02477
SRR3384912	fruit	no	18 week after full bloom	0.534274
SRR3384911	fruit	no	19 week after full bloom	0.922377
SRR3384910	fruit	no	20 week after full bloom	0.320976
SRR768128	whole fruit	no	25 days post anthesis	25.064
SRR768129	whole fruit	no	35 days post anthesis	37.1446
SRR768130	whole fruit	no	60 days post anthesis	10.0411
SRR768131	whole fruit	no	87 days post anthesis	2.65336
SRR7343308	immature fruit flesh	no	immature	9.96196
SRR7343309	immature fruit flesh	no	immature	6.81584
SRR6320494	ripe fruit flesh	no	mature	0
SRR5405143	ripe fruit peel	no	mature	0
SRR6320572	ripe fruit peel	no	mature	0
SRR7403504	fruit	uninfected	mature	0
SRR7403506	fruit	uninfected	mature	0
SRR7403507	fruit	uninfected	mature	0
SRR7403500	fruit	infected with penicillium expansum	mature	0
SRR7403501	fruit	infected with penicillium expansum	mature	0
SRR7403508	fruit	infected with penicillium expansum	mature	0
SRR7403502	fruit	infected with penicillium expansum	mature	0
SRR7403503	fruit	infected with penicillium expansum	mature	0
SRR7403505	fruit	infected with penicillium expansum	mature	0
SRR1613973	Central seeds	no	20DAPF	0.820177
SRR1613974	Central seeds	no	20DAPF	0.929249
SRR1613975	Central seeds	no	20DAPF	1.53003
SRR1613976	Lateral seeds	no	20DAPF	1.14351
SRR1613977	Lateral seeds	no	20DAPF	1.28595
SRR1613978	Lateral seeds	no	20DAPF	1.01569
SRR3744786	stem	no	mature	6.68046
SRR3744787	stem	no	mature	7.59331
SRR3744772	stem	no	mature	6.08931
SRX765691	seedling shoot apex	no	4-6 week old seedling	16.1522
SRX765683	tree shoot apex	no	Adult (tree), new shoot has 10-12 visible leaves	12.5532
SRR1089478	leaf	Virus-free	plantlets	26.3216
SRR1089477	leaf	ASGV-infected	plantlets	24.4434
SRR767660	leaf	uninfected	fully developed	59.7963
SRR767669	leaf	2 days post infection by Venturia inaequalis	fully developed	127.749
SRR767670	leaf	4 days post infection by Venturia inaequalis	fully developed	166.169
SRR767671	leaf	6 days post infection by Venturia inaequalis	fully developed	7.28711
SRR767672	leaf	8 days post infection by Venturia inaequalis	fully developed	0
SRR767673	leaf	10 days post infection by Venturia inaequalis	fully developed	2.69244
SRR767674	leaf	12 days post infection by Venturia inaequalis	fully developed	1.28088
SRR768127	leaf	14 days post infection by Venturia inaequalis	fully developed	3.59623
SRR6308182	young leaf	no	immature leaves	8.56439
SRR3744769	leaf	no	mature	1.877
SRR3744770	leaf	no	mature	1.97435
SRR3744771	leaf	no	mature	1.63943
SRR5405145	leaf	no	mature	13.3602
SRR6320561	leaf	no	mature	2.18728