PH01000000G0560's details annotation
1.Annotation
ICBR annotation: nucleolar complex protein, putative, expressed
Blast result AT2G17250 : 8.00E-169
Blast annotation: CCAAT-binding factor
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 295558 | 306104 |
| mRNA | 295558 | 306104 |
| exon | 295558 | 296361 |
| exon | 296449 | 296541 |
| exon | 296741 | 296814 |
| exon | 297003 | 297061 |
| exon | 297161 | 297209 |
| exon | 297782 | 297879 |
| exon | 298169 | 298203 |
| exon | 298298 | 298399 |
| exon | 298844 | 298902 |
| exon | 299007 | 299181 |
| exon | 300102 | 300275 |
| exon | 300507 | 300621 |
| exon | 304755 | 304812 |
| exon | 304902 | 305007 |
| exon | 305351 | 306104 |
| CDS | 295984 | 296361 |
| CDS | 296449 | 296541 |
| CDS | 296741 | 296814 |
| CDS | 297003 | 297061 |
| CDS | 297161 | 297209 |
| CDS | 297782 | 297879 |
| CDS | 298169 | 298203 |
| CDS | 298298 | 298399 |
| CDS | 298844 | 298902 |
| CDS | 299007 | 299181 |
| CDS | 300102 | 300275 |
| CDS | 300507 | 300621 |
| CDS | 304755 | 304812 |
| CDS | 304902 | 305007 |
| CDS | 305351 | 305551 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03914.16 | CBF | 330 | 491 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0042254 | ribosome biogenesis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.