PH01000000G6470's details annotation
1.Annotation
ICBR annotation: acyl-CoA thioesterase 2, putative, expressed
Blast result AT1G01710 : 4.70E-89
Blast annotation: Acyl-CoA thioesterase family protein
2.Location
Scaffold: PH01000000
Strand: -
| Region | Start | End |
| gene | 4191028 | 4198542 |
| mRNA | 4191028 | 4198542 |
| exon | 4191028 | 4191337 |
| exon | 4191450 | 4191518 |
| exon | 4191614 | 4191662 |
| exon | 4191767 | 4191903 |
| exon | 4192804 | 4192866 |
| exon | 4193416 | 4193528 |
| exon | 4193802 | 4193889 |
| exon | 4195964 | 4196089 |
| exon | 4196218 | 4196264 |
| exon | 4196422 | 4196503 |
| exon | 4197745 | 4197812 |
| exon | 4198291 | 4198383 |
| exon | 4198459 | 4198542 |
| CDS | 4191260 | 4191337 |
| CDS | 4191450 | 4191518 |
| CDS | 4191614 | 4191662 |
| CDS | 4191767 | 4191903 |
| CDS | 4192804 | 4192866 |
| CDS | 4193416 | 4193528 |
| CDS | 4193802 | 4193889 |
| CDS | 4195964 | 4196089 |
| CDS | 4196218 | 4196264 |
| CDS | 4196422 | 4196503 |
| CDS | 4197745 | 4197812 |
| CDS | 4198291 | 4198383 |
| CDS | 4198459 | 4198474 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001165 | acyl-CoA_hydrolase_activity acyl-CoA metabolic process, histone modification, translational initiation, transcription initiation, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00027.28 | cNMP_binding | 34 | 111 |
| PF13622.5 | 4HBT_3 | 145 | 232 |
| PF02551.14 | Acyl_CoA_thio | 244 | 325 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006637 | acyl-CoA metabolic process |
| GO:0047617 | acyl-CoA hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.