PH01000001G1810's details annotation
1.Annotation
ICBR annotation: MSP domain containing protein, expressed
Blast result AT2G45140 : 8.60E-74
Blast annotation: plant VAP homolog 12
2.Location
Scaffold: PH01000001
Strand: +
| Region | Start | End |
| gene | 1217183 | 1222630 |
| mRNA | 1217183 | 1222630 |
| exon | 1217183 | 1217968 |
| exon | 1218185 | 1218255 |
| exon | 1218379 | 1218460 |
| exon | 1218565 | 1218680 |
| exon | 1218767 | 1218922 |
| exon | 1219129 | 1219170 |
| exon | 1219690 | 1219723 |
| exon | 1220073 | 1220131 |
| exon | 1221623 | 1221700 |
| exon | 1222292 | 1222630 |
| CDS | 1217911 | 1217968 |
| CDS | 1218185 | 1218255 |
| CDS | 1218379 | 1218460 |
| CDS | 1218565 | 1218680 |
| CDS | 1218767 | 1218922 |
| CDS | 1219129 | 1219170 |
| CDS | 1219690 | 1219723 |
| CDS | 1220073 | 1220131 |
| CDS | 1221623 | 1221700 |
| CDS | 1222292 | 1222399 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00635.25 | Motile_Sperm | 11 | 113 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.