PH01000001G5130's details annotation
1.Annotation
ICBR annotation: phenylalanine ammonia-lyase, putative, expressed
Blast result AT2G37040 : 0.00E+00
Blast annotation: PHE ammonia lyase 1
2.Location
Scaffold: PH01000001
Strand: +
| Region | Start | End |
| gene | 3397114 | 3400018 |
| mRNA | 3397114 | 3400018 |
| exon | 3397114 | 3397673 |
| exon | 3397770 | 3400018 |
| CDS | 3397279 | 3397673 |
| CDS | 3397770 | 3399516 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00221.18 | Lyase_aromatic | 62 | 534 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phenylalanine metabolism | phenylalanine ammonia-lyase [EC:4.3.1.24] | ko00360 | K10775 |
| Phenylpropanoid biosynthesis | phenylalanine ammonia-lyase [EC:4.3.1.24] | ko00940 | K10775 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005737 | cytoplasm |
| GO:0006559 | L-phenylalanine catabolic process |
| GO:0009058 | biosynthetic process |
| GO:0016841 | ammonia-lyase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.