PH01000002G0720's details annotation
1.Annotation
ICBR annotation: lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
Blast result AT4G12840 : 9.00E-116
Blast annotation: Protein of unknown function (DUF707)
2.Location
Scaffold: PH01000002
Strand: +
| Region | Start | End |
| gene | 486571 | 490241 |
| mRNA | 486571 | 490241 |
| exon | 486571 | 487010 |
| exon | 487231 | 487302 |
| exon | 487853 | 487876 |
| exon | 488115 | 488234 |
| exon | 488319 | 488438 |
| exon | 488547 | 488732 |
| exon | 488871 | 489205 |
| exon | 489549 | 490241 |
| CDS | 487008 | 487010 |
| CDS | 487231 | 487302 |
| CDS | 487853 | 487876 |
| CDS | 488115 | 488234 |
| CDS | 488319 | 488438 |
| CDS | 488547 | 488732 |
| CDS | 488871 | 489205 |
| CDS | 489549 | 489909 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000063 | SNARE_interactions_in_vesicular_transport RLK-Pelle_WAK_LRK10L-1 (from iTAK) GTnc GlycosylTransferases RLK-Pelle_LRR-XI-1 (from iTAK) protein phosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GTnc |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05212.11 | DUF707 | 83 | 380 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.