PH01000002G0950's details annotation
1.Annotation
ICBR annotation: dynamin family protein, putative, expressed
Blast result AT4G33650 : 0.00E+00
Blast annotation: dynamin-related protein 3A
2.Location
Scaffold: PH01000002
Strand: -
| Region | Start | End |
| gene | 682812 | 690429 |
| mRNA | 682812 | 690429 |
| exon | 682812 | 683539 |
| exon | 683645 | 683744 |
| exon | 683872 | 683924 |
| exon | 684463 | 684609 |
| exon | 684695 | 684843 |
| exon | 685008 | 685050 |
| exon | 685153 | 685260 |
| exon | 685906 | 686016 |
| exon | 686450 | 686587 |
| exon | 686843 | 686935 |
| exon | 687048 | 687140 |
| exon | 687247 | 687356 |
| exon | 687482 | 687530 |
| exon | 687725 | 687838 |
| exon | 687935 | 687994 |
| exon | 688538 | 688639 |
| exon | 688753 | 688781 |
| exon | 688873 | 689155 |
| exon | 689963 | 690429 |
| CDS | 683321 | 683539 |
| CDS | 683645 | 683744 |
| CDS | 683872 | 683924 |
| CDS | 684463 | 684609 |
| CDS | 684695 | 684843 |
| CDS | 685008 | 685050 |
| CDS | 685153 | 685260 |
| CDS | 685906 | 686016 |
| CDS | 686450 | 686587 |
| CDS | 686843 | 686935 |
| CDS | 687048 | 687140 |
| CDS | 687247 | 687356 |
| CDS | 687482 | 687530 |
| CDS | 687725 | 687838 |
| CDS | 687935 | 687994 |
| CDS | 688538 | 688639 |
| CDS | 688753 | 688781 |
| CDS | 688873 | 689155 |
| CDS | 689963 | 690340 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000931 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis signal recognition particle, ubiquitin thiolesterase activity, ubiquitin-dependent protein catabolic process, chorismate metabolic process, aromatic amino acid family biosynthetic process, SRP-dependent cotranslational protein targeting to membrane, chorismate mutase activity, 7S RNA binding, Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00350.22 | Dynamin_N | 50 | 230 |
| PF01031.19 | Dynamin_M | 265 | 502 |
| PF02212.17 | GED | 635 | 724 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | dynamin GTPase [EC:3.6.5.5] | ko04144 | K01528 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.