PH01000003G2320's details annotation
1.Annotation
ICBR annotation: rickettsia 17 kDa surface antigen family protein, expressed
Blast result AT1G08480 : 1.50E-31
Blast annotation: -
2.Location
Scaffold: PH01000003
Strand: +
| Region | Start | End |
| gene | 1509729 | 1511435 |
| mRNA | 1509729 | 1511435 |
| exon | 1509729 | 1510025 |
| exon | 1510096 | 1510225 |
| exon | 1510350 | 1510493 |
| exon | 1511130 | 1511435 |
| CDS | 1509861 | 1510025 |
| CDS | 1510096 | 1510225 |
| CDS | 1510350 | 1510493 |
| CDS | 1511130 | 1511143 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000173 | response to oxidative stress, peroxidase activity, heme binding, oxidation-reduction process, Phenylpropanoid_biosynthesis Phenylalanine_metabolism Methane_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.