PH01000003G3770's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme E2 O, putative, expressed
Blast result AT3G15355 : 6.00E-82
Blast annotation: ubiquitin-conjugating enzyme 25
2.Location
Scaffold: PH01000003
Strand: +
| Region | Start | End |
| gene | 2524309 | 2531572 |
| mRNA | 2524309 | 2531572 |
| exon | 2524309 | 2525133 |
| exon | 2525245 | 2525350 |
| exon | 2529265 | 2529675 |
| exon | 2529755 | 2529818 |
| exon | 2530339 | 2530478 |
| exon | 2530561 | 2530872 |
| exon | 2531064 | 2531572 |
| CDS | 2525120 | 2525133 |
| CDS | 2525245 | 2525350 |
| CDS | 2529265 | 2529675 |
| CDS | 2529755 | 2529818 |
| CDS | 2530339 | 2530478 |
| CDS | 2530561 | 2530872 |
| CDS | 2531064 | 2531390 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000695 | STE_STE11 (from iTAK) RLK-Pelle_RLCK-VIIa-1 (from iTAK) SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001227 | RLK-Pelle_RLCK-VIIa-1 (from iTAK) Ubiquitin_mediated_proteolysis Amino_sugar_and_nucleotide_sugar_metabolism Galactose_metabolism galactose metabolic process, |
| coexpression network | CFinderM001716 | Amino_sugar_and_nucleotide_sugar_metabolism cellular metabolic process, GT8 GlycosylTransferases coenzyme binding, copper ion transport, copper-transporting_ATPase_activity Starch_and_sucrose_metabolism Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 185 | 318 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 O [EC:6.3.2.19] | ko04120 | K10581 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.