PH01000004G1140's details annotation
1.Annotation
ICBR annotation: U-box domain-containing protein, putative, expressed
Blast result AT2G35930 : 4.30E-84
Blast annotation: plant U-box 23
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 763737 | 765792 |
| mRNA | 763737 | 765792 |
| exon | 763737 | 765792 |
| CDS | 763824 | 765035 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000612 | photosystem II, extrinsic to membrane, oxygen evolving complex, RLK-Pelle_DLSV (from iTAK) ubiquitin ligase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04564.14 | U-box | 8 | 79 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000151 | ubiquitin ligase complex |
| GO:0004842 | ubiquitin-protein ligase activity |
| GO:0005488 | binding |
| GO:0005515 | protein binding |
| GO:0016567 | protein ubiquitination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.