PH01000005G2030's details annotation
1.Annotation
ICBR annotation: lung seven transmembrane domain containing protein, putative, expressed
Blast result AT2G01070 : 0.00E+00
Blast annotation: Lung seven transmembrane receptor family protein
2.Location
Scaffold: PH01000005
Strand: -
| Region | Start | End |
| gene | 1276061 | 1280662 |
| mRNA | 1276061 | 1280662 |
| exon | 1276061 | 1276684 |
| exon | 1276812 | 1276948 |
| exon | 1277871 | 1277966 |
| exon | 1278350 | 1279286 |
| exon | 1279934 | 1280662 |
| CDS | 1276516 | 1276684 |
| CDS | 1276812 | 1276948 |
| CDS | 1277871 | 1277966 |
| CDS | 1278350 | 1279286 |
| CDS | 1279934 | 1280127 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001697 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis L-phenylalanine biosynthetic process, cellular carbohydrate metabolic process, peptide-methionine-(S)-S-oxide reductase activity, prephenate dehydratase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, Carbon_fixation_pathways_in_prokaryotes cofactor binding, Citrate_cycle_(TCA_cycle) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06814.12 | Lung_7-TM_R | 167 | 454 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.