Annotation of co-expression genes

PH01000005G3500's details annotation

1.Annotation

ICBR annotation: dehydrogenase/reductase SDR family member 2, putative, expressed

Blast result AT4G05530 : 4.40E-80
Blast annotation: indole-3-butyric acid response 1

2.Location

Scaffold: PH01000005
Strand: -

RegionStartEnd
gene22380652243499
mRNA22380652243499
exon22380652238738
exon22389242239025
exon22399072240032
exon22401232240257
exon22410242241140
exon22412342243499
CDS22386222238738
CDS22389242239025
CDS22399072240032
CDS22401232240257
CDS22410242241140
CDS22412342241365

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001065threonine-type endopeptidase activity,
endopeptidase activity,
proteasome core complex,
proteolysis involved in cellular protein catabolic process,
Proteasome
thiol oxidase activity,
Protein_processing_in_endoplasmic_reticulum
proteasome core complex, alpha-subunit complex,
Retinol_metabolism

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13561.5adh_short_C220249

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Retinol metabolismdehydrogenase/reductase SDR family member 4 [EC:1.1.-.-]ko00830K11147
Peroxisomedehydrogenase/reductase SDR family member 4 [EC:1.1.-.-]ko04146K11147

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016491oxidoreductase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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