PH01000008G1310's details annotation
1.Annotation
ICBR annotation: myb-like DNA-binding domain containing protein, expressed
Blast result AT5G18240 : 7.00E-40
Blast annotation: myb-related protein 1
2.Location
Scaffold: PH01000008
Strand: -
| Region | Start | End |
| gene | 799848 | 801386 |
| mRNA | 799848 | 801386 |
| exon | 799848 | 800509 |
| exon | 800607 | 800858 |
| exon | 800951 | 801027 |
| exon | 801112 | 801386 |
| CDS | 800096 | 800509 |
| CDS | 800607 | 800858 |
| CDS | 800951 | 801027 |
| CDS | 801112 | 801226 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GARP-G2-like |
| Transcription_Regulator(from PlantTFDB) | G2-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 16 | 67 |
| PF14379.5 | Myb_CC_LHEQLE | 134 | 173 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.