PH01000008G1540's details annotation
1.Annotation
ICBR annotation: polypyrimidine tract-binding protein, putative, expressed
Blast result AT3G01150 : 5.00E-158
Blast annotation: polypyrimidine tract-binding protein 1
2.Location
Scaffold: PH01000008
Strand: -
| Region | Start | End |
| gene | 995293 | 1000779 |
| mRNA | 995293 | 1000779 |
| exon | 995293 | 996127 |
| exon | 996362 | 996474 |
| exon | 997436 | 997517 |
| exon | 997632 | 997748 |
| exon | 997819 | 997876 |
| exon | 997989 | 998084 |
| exon | 998156 | 998244 |
| exon | 998306 | 998368 |
| exon | 998956 | 999165 |
| exon | 1000155 | 1000779 |
| CDS | 995714 | 996127 |
| CDS | 996362 | 996474 |
| CDS | 997436 | 997517 |
| CDS | 997632 | 997748 |
| CDS | 997819 | 997876 |
| CDS | 997989 | 998084 |
| CDS | 998156 | 998244 |
| CDS | 998306 | 998368 |
| CDS | 998956 | 999165 |
| CDS | 1000155 | 1000337 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 21 | 71 |
| PF13893.5 | RRM_5 | 102 | 175 |
| PF13893.5 | RRM_5 | 234 | 326 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.