PH01000009G1330's details annotation
1.Annotation
ICBR annotation: auxin efflux carrier component, putative, expressed
Blast result AT5G01990 : 4.00E-151
Blast annotation: Auxin efflux carrier family protein
2.Location
Scaffold: PH01000009
Strand: +
| Region | Start | End |
| gene | 852702 | 856799 |
| mRNA | 852702 | 856799 |
| exon | 852702 | 853824 |
| exon | 854005 | 854084 |
| exon | 854762 | 854886 |
| exon | 854977 | 855098 |
| exon | 855255 | 855482 |
| exon | 855593 | 855667 |
| exon | 855760 | 855860 |
| exon | 855981 | 856033 |
| exon | 856154 | 856348 |
| exon | 856529 | 856799 |
| CDS | 853630 | 853824 |
| CDS | 854005 | 854084 |
| CDS | 854762 | 854886 |
| CDS | 854977 | 855098 |
| CDS | 855255 | 855482 |
| CDS | 855593 | 855667 |
| CDS | 855760 | 855860 |
| CDS | 855981 | 856033 |
| CDS | 856154 | 856348 |
| CDS | 856529 | 856650 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03547.17 | Mem_trans | 31 | 423 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.