PH01000010G3150's details annotation
1.Annotation
ICBR annotation: transcription factor Dp, putative, expressed
Blast result AT5G03415 : 4.60E-95
Blast annotation: Transcription factor DP
2.Location
Scaffold: PH01000010
Strand: +
| Region | Start | End |
| gene | 2213031 | 2219450 |
| mRNA | 2213031 | 2219450 |
| exon | 2213031 | 2213778 |
| exon | 2214550 | 2214626 |
| exon | 2214885 | 2214928 |
| exon | 2215675 | 2215932 |
| exon | 2216015 | 2216083 |
| exon | 2217386 | 2217457 |
| exon | 2217573 | 2217643 |
| exon | 2218476 | 2219450 |
| CDS | 2213459 | 2213778 |
| CDS | 2214550 | 2214626 |
| CDS | 2214885 | 2214928 |
| CDS | 2215675 | 2215932 |
| CDS | 2216015 | 2216083 |
| CDS | 2217386 | 2217457 |
| CDS | 2217573 | 2217643 |
| CDS | 2218476 | 2218713 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000120 | proline biosynthetic process, glutamate 5-kinase activity, cellular amino acid biosynthetic process, oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, oxidoreductase activity, metabolic process, CAMK_OST1L (from iTAK) E2F/DP Transcription_Regulator(from PlantTFDB) E2F-DP Transcription_Regulator(from iTAK) glutamate-5-semialdehyde dehydrogenase activity, oxidation-reduction process, transcription factor complex, cytoplasm, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | E2F-DP |
| Transcription_Regulator(from PlantTFDB) | E2F/DP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02319.19 | E2F_TDP | 124 | 220 |
| PF08781.9 | DP | 228 | 353 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005667 | transcription factor complex |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.