PH01000011G2100's details annotation
1.Annotation
ICBR annotation: cation-transporting ATPase, putative, expressed
Blast result AT5G23630 : 6.40E-75
Blast annotation: phosphate deficiency response 2
2.Location
Scaffold: PH01000011
Strand: -
| Region | Start | End |
| gene | 1425095 | 1430470 |
| mRNA | 1425095 | 1430470 |
| exon | 1425095 | 1425597 |
| exon | 1425685 | 1425796 |
| exon | 1426294 | 1426442 |
| exon | 1426898 | 1426963 |
| exon | 1428159 | 1428287 |
| exon | 1428427 | 1428444 |
| exon | 1428675 | 1430470 |
| CDS | 1425433 | 1425597 |
| CDS | 1425685 | 1425796 |
| CDS | 1426294 | 1426442 |
| CDS | 1426898 | 1426963 |
| CDS | 1428159 | 1428287 |
| CDS | 1428427 | 1428444 |
| CDS | 1428675 | 1428869 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006812 | cation transport |
| GO:0016021 | integral to membrane |
| GO:0016887 | ATPase activity |
| GO:0019829 | cation-transporting ATPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.