PH01000011G3020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G15545 : 2.00E-47
Blast annotation: -
2.Location
Scaffold: PH01000011
Strand: +
| Region | Start | End |
| gene | 1992597 | 1996648 |
| mRNA | 1992597 | 1996648 |
| exon | 1992597 | 1993936 |
| exon | 1994257 | 1994293 |
| exon | 1994331 | 1994387 |
| exon | 1994536 | 1994599 |
| exon | 1994743 | 1994835 |
| exon | 1994924 | 1995142 |
| exon | 1995785 | 1995827 |
| exon | 1996175 | 1996253 |
| exon | 1996347 | 1996648 |
| CDS | 1993584 | 1993936 |
| CDS | 1994257 | 1994293 |
| CDS | 1994331 | 1994387 |
| CDS | 1994536 | 1994599 |
| CDS | 1994743 | 1994835 |
| CDS | 1994924 | 1995142 |
| CDS | 1995785 | 1995827 |
| CDS | 1996175 | 1996253 |
| CDS | 1996347 | 1996439 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000718 | GH1 Glycoside_Hydrolases thylakoid membrane organization, photosystem II, Photosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.