PH01000013G0830's details annotation
1.Annotation
ICBR annotation: plant neutral invertase domain containing protein, expressed
Blast result AT1G56560 : 0.00E+00
Blast annotation: Plant neutral invertase family protein
2.Location
Scaffold: PH01000013
Strand: +
| Region | Start | End |
| gene | 551501 | 561718 |
| mRNA | 551501 | 561718 |
| exon | 551501 | 554536 |
| exon | 558386 | 558551 |
| exon | 558637 | 558848 |
| exon | 559075 | 559568 |
| exon | 559849 | 559897 |
| exon | 560001 | 561718 |
| CDS | 553925 | 554536 |
| CDS | 558386 | 558551 |
| CDS | 558637 | 558848 |
| CDS | 559075 | 559568 |
| CDS | 559849 | 559897 |
| CDS | 560001 | 560327 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH100 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12899.6 | Glyco_hydro_100 | 136 | 578 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.