PH01000013G1210's details annotation
1.Annotation
ICBR annotation: adenylosuccinate lyase, putative, expressed
Blast result AT4G18440 : 0.00E+00
Blast annotation: L-Aspartase-like family protein
2.Location
Scaffold: PH01000013
Strand: -
| Region | Start | End |
| gene | 753153 | 758362 |
| mRNA | 753153 | 758362 |
| exon | 753153 | 753939 |
| exon | 754131 | 754199 |
| exon | 754692 | 754793 |
| exon | 754966 | 755109 |
| exon | 755231 | 755347 |
| exon | 755587 | 755808 |
| exon | 756890 | 757072 |
| exon | 757161 | 757376 |
| exon | 757528 | 757707 |
| exon | 757800 | 758362 |
| CDS | 753709 | 753939 |
| CDS | 754131 | 754199 |
| CDS | 754692 | 754793 |
| CDS | 754966 | 755109 |
| CDS | 755231 | 755347 |
| CDS | 755587 | 755808 |
| CDS | 756890 | 757072 |
| CDS | 757161 | 757376 |
| CDS | 757528 | 757707 |
| CDS | 757800 | 757973 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00206.19 | Lyase_1 | 94 | 392 |
| PF08328.10 | ASL_C | 409 | 523 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | adenylosuccinate lyase [EC:4.3.2.2] | ko00230 | K01756 |
| 273 Alanine, aspartate and glutamate metabolism | adenylosuccinate lyase [EC:4.3.2.2] | K01756 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004018 | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity |
| GO:0006188 | IMP biosynthetic process |
| GO:0009152 | purine ribonucleotide biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.