PH01000015G0080's details annotation
1.Annotation
ICBR annotation: fatty acid hydroxylase, putative, expressed
Blast result AT3G02580 : 9.00E-124
Blast annotation: sterol 1
2.Location
Scaffold: PH01000015
Strand: +
| Region | Start | End |
| gene | 40924 | 45404 |
| mRNA | 40924 | 45404 |
| exon | 40924 | 41253 |
| exon | 41316 | 41396 |
| exon | 43344 | 43649 |
| exon | 44130 | 45404 |
| CDS | 41013 | 41253 |
| CDS | 41316 | 41396 |
| CDS | 43344 | 43649 |
| CDS | 44130 | 44419 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04116.12 | FA_hydroxylase | 138 | 267 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Steroid biosynthesis | lathosterol oxidase [EC:1.14.21.6] | ko00100 | K00227 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.