Annotation of co-expression genes

PH01000016G1030's details annotation

1.Annotation

ICBR annotation: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed

Blast result AT5G50920 : 0.00E+00
Blast annotation: CLPC homologue 1

2.Location

Scaffold: PH01000016
Strand: -

RegionStartEnd
gene821237828527
mRNA821237828527
exon821237822912
exon823187823276
exon823360823435
exon824259824476
exon824697824912
exon825340825525
exon825605825727
exon825812825927
exon826634828527
CDS821734822912
CDS823187823276
CDS823360823435
CDS824259824476
CDS824697824912
CDS825340825525
CDS825605825727
CDS825812825927
CDS826634827183

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02861.19Clp_N101153
PF02861.19Clp_N177228
PF00004.28AAA292408
PF02151.18UVR504539
PF07724.13AAA_2629803
PF10431.8ClpB_D2-small810889

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0017111nucleoside-triphosphatase activity
GO:0019538protein metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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