PH01000018G1710's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G29980 : 3.00E-141
Blast annotation: Protein of unknown function, DUF642
2.Location
Scaffold: PH01000018
Strand: +
| Region | Start | End |
| gene | 1035533 | 1042360 |
| mRNA | 1035533 | 1042360 |
| exon | 1035533 | 1036161 |
| exon | 1037291 | 1037421 |
| exon | 1038249 | 1038416 |
| exon | 1038510 | 1038845 |
| exon | 1039054 | 1039634 |
| exon | 1040327 | 1040674 |
| exon | 1041259 | 1042360 |
| CDS | 1035752 | 1036161 |
| CDS | 1037291 | 1037421 |
| CDS | 1038249 | 1038416 |
| CDS | 1038510 | 1038845 |
| CDS | 1039054 | 1039634 |
| CDS | 1040327 | 1040674 |
| CDS | 1041259 | 1042110 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04862.11 | DUF642 | 181 | 339 |
| PF04862.11 | DUF642 | 351 | 517 |
| PF14223.5 | Retrotran_gag_2 | 670 | 793 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.