PH01000018G2550's details annotation
1.Annotation
ICBR annotation: aminotransferase, classes I and II, domain containing protein, expressed
Blast result AT5G11520 : 2.00E-176
Blast annotation: aspartate aminotransferase 3
2.Location
Scaffold: PH01000018
Strand: -
| Region | Start | End |
| gene | 1670977 | 1677747 |
| mRNA | 1670977 | 1677747 |
| exon | 1670977 | 1671088 |
| exon | 1672175 | 1672295 |
| exon | 1672953 | 1673047 |
| exon | 1673180 | 1673301 |
| exon | 1673961 | 1674098 |
| exon | 1674265 | 1674428 |
| exon | 1674631 | 1674751 |
| exon | 1674867 | 1674963 |
| exon | 1675137 | 1675220 |
| exon | 1675969 | 1676052 |
| exon | 1676701 | 1676762 |
| exon | 1676862 | 1676933 |
| exon | 1677081 | 1677747 |
| CDS | 1671004 | 1671088 |
| CDS | 1672175 | 1672295 |
| CDS | 1672953 | 1673047 |
| CDS | 1673180 | 1673301 |
| CDS | 1673961 | 1674098 |
| CDS | 1674265 | 1674428 |
| CDS | 1674631 | 1674751 |
| CDS | 1674867 | 1674963 |
| CDS | 1675137 | 1675220 |
| CDS | 1675969 | 1676052 |
| CDS | 1676701 | 1676762 |
| CDS | 1676862 | 1676933 |
| CDS | 1677081 | 1677149 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 36 | 92 |
| PF00155.20 | Aminotran_1_2 | 96 | 429 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Carbon fixation in photosynthetic organisms | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | ko00710 | K14454 |
| 00250 Alanine, aspartate and glutamate metabolism | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | K14454 | |
| Cysteine and methionine metabolism | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | ko00270 | K14454 |
| Arginine and proline metabolism | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | ko00330 | K14454 |
| Tyrosine metabolism | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | ko00350 | K14454 |
| Phenylalanine metabolism | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | ko00360 | K14454 |
| 438 Phenylalanine, tyrosine and tryptophan biosynthesis | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | K14454 | |
| Isoquinoline alkaloid biosynthesis | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | ko00950 | K14454 |
| 966 Tropane, piperidine and pyridine alkaloid biosynthesis | aspartate aminotransferase, cytoplasmic [EC:2.6.1.1] | K14454 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0006520 | cellular amino acid metabolic process |
| GO:0008483 | transaminase activity |
| GO:0009058 | biosynthetic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.