Annotation of co-expression genes

PH01000019G0830's details annotation

1.Annotation

ICBR annotation: 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed

Blast result AT3G13930 : 3.00E-176
Blast annotation: Dihydrolipoamide acetyltransferase, long form protein

2.Location

Scaffold: PH01000019
Strand: +

RegionStartEnd
gene631842641793
mRNA631842641793
exon631842632688
exon634860634953
exon635591635641
exon635764635837
exon635921636015
exon636414636454
exon636903636958
exon637090637164
exon637269637361
exon637862638110
exon638189638261
exon639537639622
exon639709639794
exon639938640013
exon640183640250
exon640337640403
exon640474640569
exon640640640742
exon641196641793
CDS632578632688
CDS634860634953
CDS635591635641
CDS635764635837
CDS635921636015
CDS636414636454
CDS636903636958
CDS637090637164
CDS637269637361
CDS637862638110
CDS638189638261
CDS639537639622
CDS639709639794
CDS639938640013
CDS640183640250
CDS640337640403
CDS640474640569
CDS640640640742
CDS641196641368

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000421pyruvate dehydrogenase complex,
cellular modified amino acid biosynthetic process,
glutathione biosynthetic process,
pyruvate metabolic process,
dihydrolipoyllysine-residue acetyltransferase activity,
glutamate-cysteine ligase activity,
glycogen_phosphorylase_activity
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
Pyruvate_metabolism
Glutathione_metabolism
transferase activity, transferring acyl groups,
metabolic process,
coexpression networkCFinderM001608pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
pyruvate metabolic process,
protein processing,
small-subunit processome,
integral to membrane,
transferase activity, transferring acyl groups,
mRNA_surveillance_pathway
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
Citrate_cycle_(TCA_cycle)
coexpression networkCFinderM001634Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
transferase activity, transferring acyl groups,
pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
metabolic process,
pyruvate metabolic process,
small-subunit processome,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00364.21Biotin_lipoyl162234
PF02817.16E3_binding299334
PF00198.222-oxoacid_dh358566

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycolysis / Gluconeogenesispyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12]ko00010K00627
Citrate cycle (TCA cycle)pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12]ko00020K00627
Pyruvate metabolismpyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12]ko00620K00627

10.Gene Ontology

GO AccessionGO Annotation
GO:0004742dihydrolipoyllysine-residue acetyltransferase activity
GO:0006090pyruvate metabolic process
GO:0008152metabolic process
GO:0016746transferase activity, transferring acyl groups
GO:0045254pyruvate dehydrogenase complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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