PH01000020G0020's details annotation
1.Annotation
ICBR annotation: zinc finger, ZZ type family protein, expressed
Blast result AT4G24690 : 3.70E-56
Blast annotation: ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
2.Location
Scaffold: PH01000020
Strand: -
| Region | Start | End |
| gene | 4815 | 10549 |
| mRNA | 4815 | 10549 |
| exon | 4815 | 5756 |
| exon | 5847 | 5996 |
| exon | 6105 | 6320 |
| exon | 6439 | 6529 |
| exon | 6635 | 7935 |
| exon | 8534 | 8764 |
| exon | 9347 | 9468 |
| exon | 9662 | 10549 |
| CDS | 5088 | 5756 |
| CDS | 5847 | 5996 |
| CDS | 6105 | 6320 |
| CDS | 6439 | 6529 |
| CDS | 6635 | 7935 |
| CDS | 8534 | 8764 |
| CDS | 9347 | 9468 |
| CDS | 9662 | 9839 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00564.23 | PB1 | 122 | 179 |
| PF00564.23 | PB1 | 199 | 256 |
| PF00569.16 | ZZ | 591 | 624 |
| PF16158.4 | N_BRCA1_IG | 663 | 764 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.