PH01000020G1250's details annotation
1.Annotation
ICBR annotation: steroid nuclear receptor, ligand-binding, putative, expressed
Blast result AT5G40640 : 8.00E-119
Blast annotation: -
2.Location
Scaffold: PH01000020
Strand: +
| Region | Start | End |
| gene | 848374 | 855562 |
| mRNA | 848374 | 855562 |
| exon | 848374 | 849941 |
| exon | 851625 | 851761 |
| exon | 851858 | 851994 |
| exon | 852607 | 852895 |
| exon | 853046 | 853152 |
| exon | 853237 | 853384 |
| exon | 853620 | 853818 |
| exon | 854008 | 854137 |
| exon | 854721 | 855014 |
| exon | 855099 | 855562 |
| CDS | 849848 | 849941 |
| CDS | 851625 | 851761 |
| CDS | 851858 | 851994 |
| CDS | 852607 | 852895 |
| CDS | 853046 | 853152 |
| CDS | 853237 | 853384 |
| CDS | 853620 | 853818 |
| CDS | 854008 | 854137 |
| CDS | 854721 | 855014 |
| CDS | 855099 | 855348 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.