PH01000020G1370's details annotation
1.Annotation
ICBR annotation: alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed
Blast result AT3G27310 : 2.90E-51
Blast annotation: plant UBX domain-containing protein 1
2.Location
Scaffold: PH01000020
Strand: +
| Region | Start | End |
| gene | 937875 | 940590 |
| mRNA | 937875 | 940590 |
| exon | 937875 | 938112 |
| exon | 938898 | 939002 |
| exon | 939280 | 939490 |
| exon | 940195 | 940590 |
| CDS | 937989 | 938112 |
| CDS | 938898 | 939002 |
| CDS | 939280 | 939490 |
| CDS | 940195 | 940198 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00789.19 | UBX | 126 | 198 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.