PH01000021G0290's details annotation
1.Annotation
ICBR annotation: ZOS2-19 - C2H2 zinc finger protein
Blast result AT5G04390 : 1.50E-35
Blast annotation: C2H2-type zinc finger family protein
2.Location
Scaffold: PH01000021
Strand: +
| Region | Start | End |
| gene | 170619 | 172243 |
| mRNA | 170619 | 172243 |
| exon | 170619 | 172243 |
| CDS | 170793 | 171707 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001118 | Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, HSF Transcription_Regulator(from PlantTFDB) threonine-tRNA ligase activity, tRNA aminoacylation, C2H2 Transcription_Regulator(from PlantTFDB) ligase activity, forming aminoacyl-tRNA and related compounds, tRNA aminoacylation for protein translation, cellular protein metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2H2 |
| Transcription_Regulator(from PlantTFDB) | C2H2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13912.5 | zf-C2H2_6 | 115 | 140 |
| PF13912.5 | zf-C2H2_6 | 203 | 227 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.