PH01000022G0840's details annotation
1.Annotation
ICBR annotation: ammonium transporter protein, putative, expressed
Blast result AT2G38290 : 0.00E+00
Blast annotation: ammonium transporter 2
2.Location
Scaffold: PH01000022
Strand: -
| Region | Start | End |
| gene | 557612 | 558825 |
| mRNA | 557612 | 558825 |
| exon | 557612 | 558388 |
| exon | 558544 | 558825 |
| CDS | 557841 | 558388 |
| CDS | 558544 | 558595 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000084 | cell wall macromolecule catabolic process, chitin catabolic process, WRKY Transcription_Regulator(from PlantTFDB) defense response to fungus, ammonium_transport ammonium_transmembrane_transport defense response to bacterium, metabolic process, chitinase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00909.20 | Ammonium_transp | 25 | 441 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008519 | ammonium transmembrane transporter activity |
| GO:0015696 | ammonium transport |
| GO:0016020 | membrane |
| GO:0072488 | ammonium transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.