Annotation of co-expression genes

PH01000024G2570's details annotation

1.Annotation

ICBR annotation: CPuORF26 - conserved peptide uORF-containing transcript, expressed

Blast result AT3G18000 : 0.00E+00
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

2.Location

Scaffold: PH01000024
Strand: +

RegionStartEnd
gene17810561785483
mRNA17810561785483
exon17810561781454
exon17816161781740
exon17821391782222
exon17828191782956
exon17830521783189
exon17832901783328
exon17837661783876
exon17839601784101
exon17841921784472
exon17847591784920
exon17850241785077
exon17852001785274
exon17853481785483
CDS17814211781454
CDS17816161781740
CDS17821391782222
CDS17828191782956
CDS17830521783189
CDS17832901783328
CDS17837661783876
CDS17839601784101
CDS17841921784472
CDS17847591784920
CDS17850241785077
CDS17852001785274
CDS17853481785443

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13649.5Methyltransf_2594186
PF13847.5Methyltransf_31284399

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000234phosphoethanolamine N-methyltransferase activity
GO:0006656phosphatidylcholine biosynthetic process
GO:0008152metabolic process
GO:0008168methyltransferase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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