PH01000025G0890's details annotation
1.Annotation
ICBR annotation: EXS family protein, putative, expressed
Blast result AT5G35730 : 3.50E-68
Blast annotation: EXS (ERD1/XPR1/SYG1) family protein
2.Location
Scaffold: PH01000025
Strand: -
| Region | Start | End |
| gene | 652234 | 656485 |
| mRNA | 652234 | 656485 |
| exon | 652234 | 652627 |
| exon | 652744 | 652778 |
| exon | 653188 | 653338 |
| exon | 653600 | 653647 |
| exon | 653942 | 653995 |
| exon | 654167 | 654280 |
| exon | 655401 | 655475 |
| exon | 655927 | 656485 |
| CDS | 652373 | 652627 |
| CDS | 652744 | 652778 |
| CDS | 653188 | 653338 |
| CDS | 653600 | 653647 |
| CDS | 653942 | 653995 |
| CDS | 654167 | 654280 |
| CDS | 655401 | 655475 |
| CDS | 655927 | 655989 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001273 | |
| coexpression network | CFinderM001852 | calcium-dependent phospholipid binding, single-stranded DNA binding, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03124.13 | EXS | 38 | 170 |
| PF03124.13 | EXS | 178 | 234 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.