PH01000025G1070's details annotation
1.Annotation
ICBR annotation: H-BTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed
Blast result AT3G50780 : 1.00E-137
Blast annotation: -
2.Location
Scaffold: PH01000025
Strand: +
| Region | Start | End |
| gene | 780890 | 784963 |
| mRNA | 780890 | 784963 |
| exon | 780890 | 783241 |
| exon | 783466 | 784360 |
| exon | 784708 | 784963 |
| CDS | 782615 | 783241 |
| CDS | 783466 | 784360 |
| CDS | 784708 | 784820 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TRAF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00651.30 | BTB | 121 | 228 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.