PH01000025G2130's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT2G36060 : 2.80E-69
Blast annotation: MMS ZWEI homologue 3
2.Location
Scaffold: PH01000025
Strand: -
| Region | Start | End |
| gene | 1581175 | 1585272 |
| mRNA | 1581175 | 1585272 |
| exon | 1581175 | 1582100 |
| exon | 1582184 | 1582309 |
| exon | 1582407 | 1582546 |
| exon | 1583432 | 1583514 |
| exon | 1583837 | 1583891 |
| exon | 1584359 | 1585272 |
| CDS | 1581960 | 1582100 |
| CDS | 1582184 | 1582309 |
| CDS | 1582407 | 1582546 |
| CDS | 1583432 | 1583514 |
| CDS | 1583837 | 1583891 |
| CDS | 1584359 | 1584392 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 43 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.