PH01000025G2230's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT3G22750 : 1.00E-137
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000025
Strand: +
| Region | Start | End |
| gene | 1665870 | 1669585 |
| mRNA | 1665870 | 1669585 |
| exon | 1665870 | 1667098 |
| exon | 1668054 | 1668175 |
| exon | 1668381 | 1668589 |
| exon | 1668672 | 1668846 |
| exon | 1669019 | 1669153 |
| exon | 1669240 | 1669585 |
| CDS | 1666804 | 1667098 |
| CDS | 1668054 | 1668175 |
| CDS | 1668381 | 1668589 |
| CDS | 1668672 | 1668846 |
| CDS | 1669019 | 1669153 |
| CDS | 1669240 | 1669446 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000483 | GRAS Transcription_Regulator(from PlantTFDB) TKL-Pl-4 (from iTAK) Arachidonic_acid_metabolism glycogen biosynthetic process, amino_acid_transmembrane_transport |
| coexpression network | CFinderM000584 | membrane, TKL-Pl-6 (from iTAK) TKL-Pl-4 (from iTAK) 1,3-beta-D-glucan synthase complex, (1->3)-beta-D-glucan biosynthetic process, RNA-dependent DNA replication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 74 | 351 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.