PH01000028G0690's details annotation
1.Annotation
ICBR annotation: DTA2, putative, expressed
Blast result AT5G23850 : 3.00E-72
Blast annotation: Arabidopsis thaliana protein of unknown function (DUF821)
2.Location
Scaffold: PH01000028
Strand: -
| Region | Start | End |
| gene | 476875 | 480017 |
| mRNA | 476875 | 480017 |
| exon | 476875 | 477528 |
| exon | 477958 | 478038 |
| exon | 478139 | 478168 |
| exon | 478521 | 478713 |
| exon | 479142 | 480017 |
| CDS | 477439 | 477528 |
| CDS | 477958 | 478038 |
| CDS | 478139 | 478168 |
| CDS | 478521 | 478713 |
| CDS | 479142 | 479452 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000737 | TRAF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05686.11 | Glyco_transf_90 | 1 | 171 |
| PF05686.11 | Glyco_transf_90 | 178 | 206 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.